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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20959
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)                 66   2e-11
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    43   3e-04
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.041
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)                  35   0.054
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.054
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         34   0.12 
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 30   2.0  
SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)                   30   2.0  
SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)                    29   2.7  
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)                   29   3.5  
SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9)             29   3.5  
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)             29   4.7  
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          29   4.7  
SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)              28   6.2  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              28   6.2  
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               28   8.1  
SB_4761| Best HMM Match : Ank (HMM E-Value=1.99993e-41)                28   8.1  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    28   8.1  

>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
          Length = 491

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 11/64 (17%)
 Frame = +2

Query: 509 YIWKKTERHDIFANKARLEKKKYTLHPGHT-----------DYMDRFLEEQEASGGSVVR 655
           Y+WKKTERHD +A+++RL KKKYT HPG T           DYMDRFL+E E++  S  R
Sbjct: 14  YLWKKTERHDAYASQSRLAKKKYTFHPGITSISDYRYLNRRDYMDRFLDENESAASS--R 71

Query: 656 PASP 667
            +SP
Sbjct: 72  ASSP 75


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKK 524
           WSE++ + F  GL+  GK+F+ I +  +  +S  ELV++Y   KK
Sbjct: 360 WSEDDIKKFVKGLRQFGKNFYKIHKEHLPYKSTSELVEYYYIWKK 404


>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1780

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +3

Query: 390  WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521
            W+ +E + F N  +  GKDF+ +++    T++VG+ V+FY   K
Sbjct: 918  WASKERQTFRNSFRLKGKDFNDLKKEIGETKTVGDCVEFYYLWK 961


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 378 HASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKKLKGMIYLQIKL 557
           + ++W+E+E + F+     H KDF LI    +  +SV E + FY   KK +    L  K 
Sbjct: 409 YRNIWTEKEKQTFKEKYIEHPKDFELIAA-FLENKSVSECILFYYQSKKKENYKQLARKQ 467

Query: 558 DWRRK 572
             +R+
Sbjct: 468 TLKRR 472



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 360 SAQTPPHA--SLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKK 524
           SA+   HA  S W+E++      GL+ HG+D+  I    V T++  +   FY   KK
Sbjct: 588 SARRTEHAETSRWTEKDMEIAVQGLREHGRDWAAI-SRMVMTKTDAQCKNFYFNYKK 643


>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
          Length = 460

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521
           WS  E   FE  L+ +GKDF+ I+++ +  +S   +V++Y   K
Sbjct: 263 WSAGEANLFEEALQKYGKDFNDIQKDFLPWKSFSSIVEYYYMWK 306


>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521
           WS  E   FE  L+ +GKDF+ I+++ +  +S   +V++Y   K
Sbjct: 274 WSAGEANLFEEALQKYGKDFNDIQKDFLPWKSFSSIVEYYYMWK 317


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKKLK 530
           WS E+   FE    +HGK F  I+Q  +  +SV  LV++Y   KK +
Sbjct: 262 WSLEDKVLFEQAFGSHGKSFRRIQQ-MLPDKSVSSLVKYYYSWKKTR 307


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 357 ISAQTPPHASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSV 488
           +    P H   W++EE   F  GLK HG+ +  I    + TR+V
Sbjct: 60  VEESRPSHRKPWTKEEQDLFMEGLKLHGRSWTRI-ATMIPTRTV 102


>SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)
          Length = 619

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 222 KSVCSEFRHRDELIPKGKQLRDDEEALYLLQQCGHNAEEALRRKRISAQTPPHASLW 392
           +S CS F    + I  G++ RD  E    L    +NA++AL   R+     P   LW
Sbjct: 242 RSACSTFLSPLDEIVAGRESRDTIEWTDNLHTAFYNAQKALSSTRVITLPRPEDFLW 298


>SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)
          Length = 320

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 308 IATMWPQCRGSLETETHFCTNSTSRKSLVRRRMPKFRKW 424
           +AT W + +G LE        S  R+    R +P F++W
Sbjct: 139 LATGWERRQGRLERRARGTVASDRRREQAERLLPAFKRW 177


>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
          Length = 711

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 380 RKSLVRRRMPKFRKWPKSTRKRLSLDKAEQSTNSVCRRTR 499
           RKSL  RR+ K RK  +ST   L  D  E  +++ C+R R
Sbjct: 421 RKSL--RRLSKSRKISESTPASLEADDNEVVSSNACKRAR 458


>SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1116

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 441  KDFHLIRQNKVRTRSVGELVQFYIFGKKLKGMIYL 545
            KDF  + +  VR +  G+L+ +Y+ G+K    + L
Sbjct: 1077 KDFVFVYRGAVRVKGKGQLITYYLTGRKNTSQVKL 1111


>SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 342 RLPLHCGHIVAISTGPLH 289
           RL L CGH++A++ G LH
Sbjct: 82  RLSLRCGHLMALAAGALH 99


>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
          Length = 131

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 376 GGVCAEMRFRLKASSA--LWPHCCNKYRASSSSRSCFPF 266
           GG+C    F +  S +  ++ HC   Y++  S   CF F
Sbjct: 48  GGMCIRQPFTIGGSGSTYIYGHCDATYKSGMSKEECFNF 86


>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 172 VIYLHFHKVMHHHSCID 122
           V+Y H H++MH H+ +D
Sbjct: 664 VVYFHDHRIMHEHTLLD 680


>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 324  HNAEEALRRKRISAQTPPHASLWSEEE----CRNFENGLKAHGKDFHL 455
            H A    R+K +S+QTP   +   E+E    CR+FE       KD HL
Sbjct: 878  HEARVLSRQKTLSSQTPEQCAASCEQEVTFPCRSFE--YNRANKDCHL 923


>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 184 SILDERITEEYMRKVCALNLGTGMN*FQKENSFVMMKRPCTYCNNVATM 330
           +++  R+   Y  ++ +  L  G+  F   N  +  KR C  CN V T+
Sbjct: 248 TVILPRVENRYCHQLTSGRLRNGLRWFSTVNVALRAKRKCPLCNAVNTL 296


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +2

Query: 416 RKWPKSTRKRLSLDKAEQSTNSVCRRTRPILYIWKKTERHDIFANKARLEKKKYTLHP 589
           R WPK+++K L      QS  S  + T   +Y  K    +   A K R+E+KK    P
Sbjct: 44  RLWPKTSKKTLEKMIPLQSVLSSQQMTIGKIYCAKLIYENYKHAKKKRMERKKKGRRP 101


>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
          Length = 621

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 118 EGLCSYDDALPYENEDKLLWNPSILDERITEEYMRKVCA 234
           +G C+ D   P  N+  LL N  +LD      Y    CA
Sbjct: 230 DGQCTADGETPSTNDRDLLRNLPVLDRNTNVTYKNSYCA 268


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 68  TGKKL*WLVVTIKLLYLRVYAAMMMHYLMKMKINYYGILLFLMK 199
           TGK +  L +TI  + L +Y A   +Y++ + I    ILL L +
Sbjct: 428 TGKYIVHLAITISCISLLLYRASRYYYIVHLAITMSCILLSLYR 471


>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 390 KDLREVEFVQKCVSVSRLPLHCGHIVAISTGP 295
           KD+   EF      +SRL  HCG    + TGP
Sbjct: 72  KDIALREFRGTPAKLSRLDFHCGSEYCVKTGP 103


>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 229 TLFACTLQ*FFHQE*KDSIVIYLHFHKVMHHH 134
           T+   TL   +H   +  I ++ H+H   HHH
Sbjct: 42  TISTITLVLHYHHHHRQHITVHHHYHHYHHHH 73


>SB_4761| Best HMM Match : Ank (HMM E-Value=1.99993e-41)
          Length = 710

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 308 IATMWPQCRGSLETETH----FCTNSTSRKSLVRRR 403
           + T W + RG+LET  H    F T+   +K L+RRR
Sbjct: 359 VVTSWSRKRGTLETIPHVKHYFNTSREHQKRLLRRR 394


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 302  VLIATMWPQCRGSLETETHFCTNSTSRKSLVR---RRMPKFRKWPKSTRKRLSLDKAEQS 472
            VL +T+W     +   + H C NS  +K   +   ++ PK RK  K  RK+ S +++   
Sbjct: 910  VLFSTLWENSDETTLEKEHDCQNSQDKKKYQKQPWKKQPKKRK-VKGKRKQGSPNRSTAK 968

Query: 473  TN 478
             N
Sbjct: 969  PN 970


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,208,846
Number of Sequences: 59808
Number of extensions: 473333
Number of successful extensions: 1594
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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