Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20959
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018) 66 2e-11
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) 43 3e-04
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16) 35 0.054
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) 34 0.12
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38) 30 2.0
SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69) 30 2.0
SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5) 29 2.7
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 29 3.5
SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9) 29 3.5
SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05) 29 4.7
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 29 4.7
SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 28 6.2
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24) 28 6.2
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41) 28 8.1
SB_4761| Best HMM Match : Ank (HMM E-Value=1.99993e-41) 28 8.1
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 28 8.1
>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
Length = 491
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 11/64 (17%)
Frame = +2
Query: 509 YIWKKTERHDIFANKARLEKKKYTLHPGHT-----------DYMDRFLEEQEASGGSVVR 655
Y+WKKTERHD +A+++RL KKKYT HPG T DYMDRFL+E E++ S R
Sbjct: 14 YLWKKTERHDAYASQSRLAKKKYTFHPGITSISDYRYLNRRDYMDRFLDENESAASS--R 71
Query: 656 PASP 667
+SP
Sbjct: 72 ASSP 75
>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
Length = 1086
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKK 524
WSE++ + F GL+ GK+F+ I + + +S ELV++Y KK
Sbjct: 360 WSEDDIKKFVKGLRQFGKNFYKIHKEHLPYKSTSELVEYYYIWKK 404
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521
W+ +E + F N + GKDF+ +++ T++VG+ V+FY K
Sbjct: 918 WASKERQTFRNSFRLKGKDFNDLKKEIGETKTVGDCVEFYYLWK 961
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 378 HASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKKLKGMIYLQIKL 557
+ ++W+E+E + F+ H KDF LI + +SV E + FY KK + L K
Sbjct: 409 YRNIWTEKEKQTFKEKYIEHPKDFELIAA-FLENKSVSECILFYYQSKKKENYKQLARKQ 467
Query: 558 DWRRK 572
+R+
Sbjct: 468 TLKRR 472
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 360 SAQTPPHA--SLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKK 524
SA+ HA S W+E++ GL+ HG+D+ I V T++ + FY KK
Sbjct: 588 SARRTEHAETSRWTEKDMEIAVQGLREHGRDWAAI-SRMVMTKTDAQCKNFYFNYKK 643
>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
Length = 460
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521
WS E FE L+ +GKDF+ I+++ + +S +V++Y K
Sbjct: 263 WSAGEANLFEEALQKYGKDFNDIQKDFLPWKSFSSIVEYYYMWK 306
>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521
WS E FE L+ +GKDF+ I+++ + +S +V++Y K
Sbjct: 274 WSAGEANLFEEALQKYGKDFNDIQKDFLPWKSFSSIVEYYYMWK 317
>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
Length = 636
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKKLK 530
WS E+ FE +HGK F I+Q + +SV LV++Y KK +
Sbjct: 262 WSLEDKVLFEQAFGSHGKSFRRIQQ-MLPDKSVSSLVKYYYSWKKTR 307
>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
Length = 1334
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 357 ISAQTPPHASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSV 488
+ P H W++EE F GLK HG+ + I + TR+V
Sbjct: 60 VEESRPSHRKPWTKEEQDLFMEGLKLHGRSWTRI-ATMIPTRTV 102
>SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 619
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 222 KSVCSEFRHRDELIPKGKQLRDDEEALYLLQQCGHNAEEALRRKRISAQTPPHASLW 392
+S CS F + I G++ RD E L +NA++AL R+ P LW
Sbjct: 242 RSACSTFLSPLDEIVAGRESRDTIEWTDNLHTAFYNAQKALSSTRVITLPRPEDFLW 298
>SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)
Length = 320
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 308 IATMWPQCRGSLETETHFCTNSTSRKSLVRRRMPKFRKW 424
+AT W + +G LE S R+ R +P F++W
Sbjct: 139 LATGWERRQGRLERRARGTVASDRRREQAERLLPAFKRW 177
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 380 RKSLVRRRMPKFRKWPKSTRKRLSLDKAEQSTNSVCRRTR 499
RKSL RR+ K RK +ST L D E +++ C+R R
Sbjct: 421 RKSL--RRLSKSRKISESTPASLEADDNEVVSSNACKRAR 458
>SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 441 KDFHLIRQNKVRTRSVGELVQFYIFGKKLKGMIYL 545
KDF + + VR + G+L+ +Y+ G+K + L
Sbjct: 1077 KDFVFVYRGAVRVKGKGQLITYYLTGRKNTSQVKL 1111
>SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9)
Length = 167
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 342 RLPLHCGHIVAISTGPLH 289
RL L CGH++A++ G LH
Sbjct: 82 RLSLRCGHLMALAAGALH 99
>SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05)
Length = 131
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 376 GGVCAEMRFRLKASSA--LWPHCCNKYRASSSSRSCFPF 266
GG+C F + S + ++ HC Y++ S CF F
Sbjct: 48 GGMCIRQPFTIGGSGSTYIYGHCDATYKSGMSKEECFNF 86
>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 4.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 172 VIYLHFHKVMHHHSCID 122
V+Y H H++MH H+ +D
Sbjct: 664 VVYFHDHRIMHEHTLLD 680
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 324 HNAEEALRRKRISAQTPPHASLWSEEE----CRNFENGLKAHGKDFHL 455
H A R+K +S+QTP + E+E CR+FE KD HL
Sbjct: 878 HEARVLSRQKTLSSQTPEQCAASCEQEVTFPCRSFE--YNRANKDCHL 923
>SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 184 SILDERITEEYMRKVCALNLGTGMN*FQKENSFVMMKRPCTYCNNVATM 330
+++ R+ Y ++ + L G+ F N + KR C CN V T+
Sbjct: 248 TVILPRVENRYCHQLTSGRLRNGLRWFSTVNVALRAKRKCPLCNAVNTL 296
>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 416 RKWPKSTRKRLSLDKAEQSTNSVCRRTRPILYIWKKTERHDIFANKARLEKKKYTLHP 589
R WPK+++K L QS S + T +Y K + A K R+E+KK P
Sbjct: 44 RLWPKTSKKTLEKMIPLQSVLSSQQMTIGKIYCAKLIYENYKHAKKKRMERKKKGRRP 101
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 118 EGLCSYDDALPYENEDKLLWNPSILDERITEEYMRKVCA 234
+G C+ D P N+ LL N +LD Y CA
Sbjct: 230 DGQCTADGETPSTNDRDLLRNLPVLDRNTNVTYKNSYCA 268
>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1576
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 68 TGKKL*WLVVTIKLLYLRVYAAMMMHYLMKMKINYYGILLFLMK 199
TGK + L +TI + L +Y A +Y++ + I ILL L +
Sbjct: 428 TGKYIVHLAITISCISLLLYRASRYYYIVHLAITMSCILLSLYR 471
>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
Length = 416
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 390 KDLREVEFVQKCVSVSRLPLHCGHIVAISTGP 295
KD+ EF +SRL HCG + TGP
Sbjct: 72 KDIALREFRGTPAKLSRLDFHCGSEYCVKTGP 103
>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
Length = 131
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 229 TLFACTLQ*FFHQE*KDSIVIYLHFHKVMHHH 134
T+ TL +H + I ++ H+H HHH
Sbjct: 42 TISTITLVLHYHHHHRQHITVHHHYHHYHHHH 73
>SB_4761| Best HMM Match : Ank (HMM E-Value=1.99993e-41)
Length = 710
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 308 IATMWPQCRGSLETETH----FCTNSTSRKSLVRRR 403
+ T W + RG+LET H F T+ +K L+RRR
Sbjct: 359 VVTSWSRKRGTLETIPHVKHYFNTSREHQKRLLRRR 394
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 302 VLIATMWPQCRGSLETETHFCTNSTSRKSLVR---RRMPKFRKWPKSTRKRLSLDKAEQS 472
VL +T+W + + H C NS +K + ++ PK RK K RK+ S +++
Sbjct: 910 VLFSTLWENSDETTLEKEHDCQNSQDKKKYQKQPWKKQPKKRK-VKGKRKQGSPNRSTAK 968
Query: 473 TN 478
N
Sbjct: 969 PN 970
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,208,846
Number of Sequences: 59808
Number of extensions: 473333
Number of successful extensions: 1594
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -