BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20959 (686 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018) 66 2e-11 SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) 43 3e-04 SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003 SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041 SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16) 35 0.054 SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.054 SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) 34 0.12 SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38) 30 2.0 SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69) 30 2.0 SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5) 29 2.7 SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 29 3.5 SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9) 29 3.5 SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05) 29 4.7 SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7 SB_8425| Best HMM Match : EGF (HMM E-Value=0) 29 4.7 SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 28 6.2 SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24) 28 6.2 SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41) 28 8.1 SB_4761| Best HMM Match : Ank (HMM E-Value=1.99993e-41) 28 8.1 SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 28 8.1 >SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018) Length = 491 Score = 66.5 bits (155), Expect = 2e-11 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 11/64 (17%) Frame = +2 Query: 509 YIWKKTERHDIFANKARLEKKKYTLHPGHT-----------DYMDRFLEEQEASGGSVVR 655 Y+WKKTERHD +A+++RL KKKYT HPG T DYMDRFL+E E++ S R Sbjct: 14 YLWKKTERHDAYASQSRLAKKKYTFHPGITSISDYRYLNRRDYMDRFLDENESAASS--R 71 Query: 656 PASP 667 +SP Sbjct: 72 ASSP 75 >SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18) Length = 1086 Score = 42.7 bits (96), Expect = 3e-04 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +3 Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKK 524 WSE++ + F GL+ GK+F+ I + + +S ELV++Y KK Sbjct: 360 WSEDDIKKFVKGLRQFGKNFYKIHKEHLPYKSTSELVEYYYIWKK 404 >SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1780 Score = 39.1 bits (87), Expect = 0.003 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +3 Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521 W+ +E + F N + GKDF+ +++ T++VG+ V+FY K Sbjct: 918 WASKERQTFRNSFRLKGKDFNDLKKEIGETKTVGDCVEFYYLWK 961 >SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3176 Score = 35.5 bits (78), Expect = 0.041 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +3 Query: 378 HASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKKLKGMIYLQIKL 557 + ++W+E+E + F+ H KDF LI + +SV E + FY KK + L K Sbjct: 409 YRNIWTEKEKQTFKEKYIEHPKDFELIAA-FLENKSVSECILFYYQSKKKENYKQLARKQ 467 Query: 558 DWRRK 572 +R+ Sbjct: 468 TLKRR 472 Score = 30.7 bits (66), Expect = 1.2 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +3 Query: 360 SAQTPPHA--SLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKK 524 SA+ HA S W+E++ GL+ HG+D+ I V T++ + FY KK Sbjct: 588 SARRTEHAETSRWTEKDMEIAVQGLREHGRDWAAI-SRMVMTKTDAQCKNFYFNYKK 643 >SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16) Length = 460 Score = 35.1 bits (77), Expect = 0.054 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +3 Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521 WS E FE L+ +GKDF+ I+++ + +S +V++Y K Sbjct: 263 WSAGEANLFEEALQKYGKDFNDIQKDFLPWKSFSSIVEYYYMWK 306 >SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 816 Score = 35.1 bits (77), Expect = 0.054 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = +3 Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGK 521 WS E FE L+ +GKDF+ I+++ + +S +V++Y K Sbjct: 274 WSAGEANLFEEALQKYGKDFNDIQKDFLPWKSFSSIVEYYYMWK 317 >SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) Length = 636 Score = 33.9 bits (74), Expect = 0.12 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKKLK 530 WS E+ FE +HGK F I+Q + +SV LV++Y KK + Sbjct: 262 WSLEDKVLFEQAFGSHGKSFRRIQQ-MLPDKSVSSLVKYYYSWKKTR 307 >SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38) Length = 1334 Score = 29.9 bits (64), Expect = 2.0 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 357 ISAQTPPHASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSV 488 + P H W++EE F GLK HG+ + I + TR+V Sbjct: 60 VEESRPSHRKPWTKEEQDLFMEGLKLHGRSWTRI-ATMIPTRTV 102 >SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69) Length = 619 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +3 Query: 222 KSVCSEFRHRDELIPKGKQLRDDEEALYLLQQCGHNAEEALRRKRISAQTPPHASLW 392 +S CS F + I G++ RD E L +NA++AL R+ P LW Sbjct: 242 RSACSTFLSPLDEIVAGRESRDTIEWTDNLHTAFYNAQKALSSTRVITLPRPEDFLW 298 >SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5) Length = 320 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +2 Query: 308 IATMWPQCRGSLETETHFCTNSTSRKSLVRRRMPKFRKW 424 +AT W + +G LE S R+ R +P F++W Sbjct: 139 LATGWERRQGRLERRARGTVASDRRREQAERLLPAFKRW 177 >SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) Length = 711 Score = 29.1 bits (62), Expect = 3.5 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +2 Query: 380 RKSLVRRRMPKFRKWPKSTRKRLSLDKAEQSTNSVCRRTR 499 RKSL RR+ K RK +ST L D E +++ C+R R Sbjct: 421 RKSL--RRLSKSRKISESTPASLEADDNEVVSSNACKRAR 458 >SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1116 Score = 29.1 bits (62), Expect = 3.5 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +3 Query: 441 KDFHLIRQNKVRTRSVGELVQFYIFGKKLKGMIYL 545 KDF + + VR + G+L+ +Y+ G+K + L Sbjct: 1077 KDFVFVYRGAVRVKGKGQLITYYLTGRKNTSQVKL 1111 >SB_2474| Best HMM Match : Methyltransf_3 (HMM E-Value=9.9) Length = 167 Score = 29.1 bits (62), Expect = 3.5 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -3 Query: 342 RLPLHCGHIVAISTGPLH 289 RL L CGH++A++ G LH Sbjct: 82 RLSLRCGHLMALAAGALH 99 >SB_4103| Best HMM Match : Proteasome (HMM E-Value=8.2e-05) Length = 131 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Frame = -2 Query: 376 GGVCAEMRFRLKASSA--LWPHCCNKYRASSSSRSCFPF 266 GG+C F + S + ++ HC Y++ S CF F Sbjct: 48 GGMCIRQPFTIGGSGSTYIYGHCDATYKSGMSKEECFNF 86 >SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 776 Score = 28.7 bits (61), Expect = 4.7 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -2 Query: 172 VIYLHFHKVMHHHSCID 122 V+Y H H++MH H+ +D Sbjct: 664 VVYFHDHRIMHEHTLLD 680 >SB_8425| Best HMM Match : EGF (HMM E-Value=0) Length = 1955 Score = 28.7 bits (61), Expect = 4.7 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +3 Query: 324 HNAEEALRRKRISAQTPPHASLWSEEE----CRNFENGLKAHGKDFHL 455 H A R+K +S+QTP + E+E CR+FE KD HL Sbjct: 878 HEARVLSRQKTLSSQTPEQCAASCEQEVTFPCRSFE--YNRANKDCHL 923 >SB_42822| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 416 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/49 (26%), Positives = 23/49 (46%) Frame = +1 Query: 184 SILDERITEEYMRKVCALNLGTGMN*FQKENSFVMMKRPCTYCNNVATM 330 +++ R+ Y ++ + L G+ F N + KR C CN V T+ Sbjct: 248 TVILPRVENRYCHQLTSGRLRNGLRWFSTVNVALRAKRKCPLCNAVNTL 296 >SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 315 Score = 28.3 bits (60), Expect = 6.2 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +2 Query: 416 RKWPKSTRKRLSLDKAEQSTNSVCRRTRPILYIWKKTERHDIFANKARLEKKKYTLHP 589 R WPK+++K L QS S + T +Y K + A K R+E+KK P Sbjct: 44 RLWPKTSKKTLEKMIPLQSVLSSQQMTIGKIYCAKLIYENYKHAKKKRMERKKKGRRP 101 >SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) Length = 621 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/39 (33%), Positives = 17/39 (43%) Frame = +1 Query: 118 EGLCSYDDALPYENEDKLLWNPSILDERITEEYMRKVCA 234 +G C+ D P N+ LL N +LD Y CA Sbjct: 230 DGQCTADGETPSTNDRDLLRNLPVLDRNTNVTYKNSYCA 268 >SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1576 Score = 28.3 bits (60), Expect = 6.2 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +2 Query: 68 TGKKL*WLVVTIKLLYLRVYAAMMMHYLMKMKINYYGILLFLMK 199 TGK + L +TI + L +Y A +Y++ + I ILL L + Sbjct: 428 TGKYIVHLAITISCISLLLYRASRYYYIVHLAITMSCILLSLYR 471 >SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24) Length = 416 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -3 Query: 390 KDLREVEFVQKCVSVSRLPLHCGHIVAISTGP 295 KD+ EF +SRL HCG + TGP Sbjct: 72 KDIALREFRGTPAKLSRLDFHCGSEYCVKTGP 103 >SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41) Length = 131 Score = 27.9 bits (59), Expect = 8.1 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -2 Query: 229 TLFACTLQ*FFHQE*KDSIVIYLHFHKVMHHH 134 T+ TL +H + I ++ H+H HHH Sbjct: 42 TISTITLVLHYHHHHRQHITVHHHYHHYHHHH 73 >SB_4761| Best HMM Match : Ank (HMM E-Value=1.99993e-41) Length = 710 Score = 27.9 bits (59), Expect = 8.1 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +2 Query: 308 IATMWPQCRGSLETETH----FCTNSTSRKSLVRRR 403 + T W + RG+LET H F T+ +K L+RRR Sbjct: 359 VVTSWSRKRGTLETIPHVKHYFNTSREHQKRLLRRR 394 >SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) Length = 3368 Score = 27.9 bits (59), Expect = 8.1 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = +2 Query: 302 VLIATMWPQCRGSLETETHFCTNSTSRKSLVR---RRMPKFRKWPKSTRKRLSLDKAEQS 472 VL +T+W + + H C NS +K + ++ PK RK K RK+ S +++ Sbjct: 910 VLFSTLWENSDETTLEKEHDCQNSQDKKKYQKQPWKKQPKKRK-VKGKRKQGSPNRSTAK 968 Query: 473 TN 478 N Sbjct: 969 PN 970 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,208,846 Number of Sequences: 59808 Number of extensions: 473333 Number of successful extensions: 1594 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1583 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1781448916 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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