Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20959
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09040.1 68414.m01008 expressed protein 37 0.014
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 35 0.044
At1g09050.1 68414.m01009 expressed protein 34 0.077
At2g38090.1 68415.m04676 myb family transcription factor contain... 33 0.23
At3g07710.1 68416.m00929 hypothetical protein 30 1.7
At5g58900.1 68418.m07379 myb family transcription factor contain... 29 2.2
At3g10590.1 68416.m01273 myb family transcription factor contain... 29 2.2
At5g61620.1 68418.m07732 myb family transcription factor contain... 29 2.9
At2g47620.1 68415.m05941 SWIRM domain-containing protein / DNA-b... 29 2.9
At1g13880.1 68414.m01629 ELM2 domain-containing protein contains... 29 2.9
At5g08520.1 68418.m01011 myb family transcription factor contain... 28 5.0
At4g03520.1 68417.m00480 thioredoxin M-type 2, chloroplast (TRX-... 28 5.0
At3g52250.1 68416.m05742 myb family transcription factor contain... 28 5.0
At1g08750.3 68414.m00974 GPI-anchor transamidase, putative simil... 28 5.0
At1g08750.2 68414.m00973 GPI-anchor transamidase, putative simil... 28 5.0
At1g08750.1 68414.m00972 GPI-anchor transamidase, putative simil... 28 5.0
At5g04760.1 68418.m00490 myb family transcription factor contain... 28 6.7
At3g05380.1 68416.m00588 myb family transcription factor contain... 28 6.7
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)... 27 8.8
>At1g09040.1 68414.m01008 expressed protein
Length = 911
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/87 (25%), Positives = 42/87 (48%)
Frame = +3
Query: 327 NAEEALRRKRISAQTPPHASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQF 506
N+E +R + A +S W + E +F GL GK+F ++ N + + +GE++ F
Sbjct: 125 NSETKKQRSNLEAVPVIPSSSWEDLEVASFVLGLYTFGKNFTQVK-NFMENKGIGEIMLF 183
Query: 507 YIFGKKLKGMIYLQIKLDWRRKSILCI 587
Y +GK Y ++++ C+
Sbjct: 184 Y-YGKFYNSAKYHSWSESRKKRNRKCV 209
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +3
Query: 345 RRKRISAQTPPHASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFYIFGKK 524
RR + A +S W + E F GL GK+F + Q + +++ GE++ FY +GK
Sbjct: 113 RRMNLEAVPEKSSSSWEDLEVDGFVLGLYTFGKNFAQV-QKLLESKATGEILLFY-YGKF 170
Query: 525 LKGMIYLQIKLDWRRKSILCI 587
Y +++S CI
Sbjct: 171 YGSAKYKTWSNYLKKRSTRCI 191
>At1g09050.1 68414.m01009 expressed protein
Length = 916
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 327 NAEEALRRKRISAQTPPHASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQF 506
N+E +R + A +S W + E +F GL GK+F + N + + +GE++ F
Sbjct: 125 NSETKKQRLNLEAVPAIPSSSWDDLEVASFVLGLYTFGKNFTQM-NNFMENKGIGEIMLF 183
Query: 507 YIFGK 521
Y +GK
Sbjct: 184 Y-YGK 187
>At2g38090.1 68415.m04676 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
W+EEE R F GLK +GK D+ I +N V TR+
Sbjct: 143 WTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRT 175
>At3g07710.1 68416.m00929 hypothetical protein
Length = 145
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +1
Query: 130 SYDDALPYENEDKLLWNPSILDERITEEYMRKVCALNLGTGMN*FQKENSFVMMKRPCTY 309
SYDD LP EN DK + N + E+ + ++CAL FQ +++ K+
Sbjct: 33 SYDDKLPSENVDKHMENEANEKEKEEDGAADELCALQDALETTLFQHLSNYA-QKQMLQK 91
Query: 310 CNNVATMQRKP*DG 351
++ +RK G
Sbjct: 92 LRSLRAKERKELSG 105
>At5g58900.1 68418.m07379 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 288
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
W+EEE + F GLK +GK D+ I +N V TR+
Sbjct: 143 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRT 175
>At3g10590.1 68416.m01273 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 206
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 336 EALRRKRISAQTPPHASLWSEEECRNFENGLKAHGKDFH-LIRQNKVRT---RSVGELVQ 503
E+ + KR TP + W+EEE R F GLK +G+ L N V+T R V Q
Sbjct: 98 ESSQSKRRKKDTP---NPWTEEEHRLFLQGLKKYGEGASTLTSTNFVKTKTPRQVSSHAQ 154
Query: 504 FY 509
+Y
Sbjct: 155 YY 156
>At5g61620.1 68418.m07732 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 317
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 324 HNAEEALRRKRISAQTPPHASLWSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
H+ + +K +A W+EEE RNF GL GK D+ I ++ V TR+
Sbjct: 88 HSDGQIHSKKGKTAHEKKKGKPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVSTRT 142
>At2g47620.1 68415.m05941 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domains PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 512
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 381 ASLWSEEECRNFENGLKAHGKDFHLIRQN---KVRTRSVGELVQFYIFGKKLKG 533
A++W+EEE + HG D+ LI Q+ K R + +L++ FG+ L G
Sbjct: 225 AAVWTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIEL-PFGEFLMG 277
>At1g13880.1 68414.m01629 ELM2 domain-containing protein contains
Pfam profile: PF01448 ELM2 domain
Length = 424
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 73 KKTIMVGSDYQAAIPE 120
+KT+ +GSDYQA IPE
Sbjct: 125 RKTVPIGSDYQADIPE 140
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 324 HNAEEALRRKRISAQTPPHASLWSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
H E K S Q W+E+E R F GL +GK D+ I +N V TR+
Sbjct: 98 HAGESNQAGKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRT 152
>At4g03520.1 68417.m00480 thioredoxin M-type 2, chloroplast (TRX-M2)
nearly identical to SP|Q9SEU8 Thioredoxin M-type 2,
chloroplast precursor (TRX-M2) {Arabidopsis thaliana}
Length = 186
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 338 SLETETHFCTNSTSRKSLVRRRMPKFRKWPKSTRKRLSLDKAEQSTNSV 484
SL +ET ++S S SL RRM F P+S+ R+ L + S S+
Sbjct: 13 SLRSETRIVSSSPSASSLSSRRM--FAVLPESSGLRIRLSLSPASLTSI 59
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGKDFHLIRQNKVRTRSVGELVQFY 509
W+ EE F N L HGKDF I + + ++ + + +Y
Sbjct: 889 WTSEEKEIFLNLLAMHGKDFKKI-ASSLTQKTTADCIDYY 927
>At1g08750.3 68414.m00974 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 243 RHRDELIPKGKQLRDDEEALYLLQQCGHNAEEALR 347
RH + +P+ K+L DE + LL GH +E L+
Sbjct: 120 RH-ENAVPRSKRLLSDEGSHILLYMTGHGGDEFLK 153
>At1g08750.2 68414.m00973 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 243 RHRDELIPKGKQLRDDEEALYLLQQCGHNAEEALR 347
RH + +P+ K+L DE + LL GH +E L+
Sbjct: 120 RH-ENAVPRSKRLLSDEGSHILLYMTGHGGDEFLK 153
>At1g08750.1 68414.m00972 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 243 RHRDELIPKGKQLRDDEEALYLLQQCGHNAEEALR 347
RH + +P+ K+L DE + LL GH +E L+
Sbjct: 120 RH-ENAVPRSKRLLSDEGSHILLYMTGHGGDEFLK 153
>At5g04760.1 68418.m00490 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 215
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 390 WSEEECRNFENGLKAHGK-DFHLIRQNKVRTRS 485
W+E E + F GLK +GK D+ I +N V TR+
Sbjct: 101 WTENEHKLFLIGLKRYGKGDWRSISRNVVVTRT 133
>At3g05380.1 68416.m00588 myb family transcription factor contains
Pfam profile:PF00249 Myb-like DNA-binding domain
Length = 1055
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 312 QQCGHNAEEALRRKRISAQTPPHASLWSEEECRNFENGLKAHGKDFHLIRQNKVRTRSV 488
+ G + + LR+K++S + P W+ E F + + HG+++ + +RSV
Sbjct: 22 KDAGKSKKNKLRKKKLSDKLGPQ---WTRLELERFYDAYRKHGQEWRRVAAAIRNSRSV 77
>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
identical to telomerase reverse transcriptase
[Arabidopsis thaliana] GI:5880683
Length = 1123
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 395 RRRMPKFRKWPKSTRKRLSLDKAEQSTNSVCRRTRPIL 508
R+++ KFR PK+ R+ LD + S + R T +L
Sbjct: 606 RKKLSKFRFLPKANGVRMVLDFSSSSRSQSLRDTHAVL 643
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,659,106
Number of Sequences: 28952
Number of extensions: 336703
Number of successful extensions: 1023
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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