Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20957
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    93   5e-20
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    74   2e-14
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.5  
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr...    25   8.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 40/60 (66%), Positives = 49/60 (81%)
 Frame = -1

Query: 180 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 1
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83


>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 36/73 (49%), Positives = 49/73 (67%)
 Frame = +3

Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           +K     L  +++  ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   KT K+I+K
Sbjct: 50  RKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKK 109

Query: 654 KSLFPPRVYAVKA 692
           +  FP R YA+KA
Sbjct: 110 ERYFPLRKYALKA 122



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 22/57 (38%), Positives = 28/57 (49%)
 Frame = +1

Query: 334 VKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
           +K  ELR +                 +LRV K+ GG  SKLSKI+  RK IAR+  V
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTV 59


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 704 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 618
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
 Frame = +3

Query: 471 CKKSYRTCLHCVSQKMKVNLRNH---------YKNKKYKPLDLRAKKTRAMRKALTKHEA 623
           C  +Y TC+ C +   + + RNH         Y+   Y+P     KK +    A+   E 
Sbjct: 23  CHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQKGLYRPTKKELKKAKMNGNAVNSKEL 82

Query: 624 KIKT 635
              T
Sbjct: 83  SPNT 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,894
Number of Sequences: 5004
Number of extensions: 48201
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)