BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20957 (711 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 6e-23 SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23) 73 2e-13 SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1) 29 4.9 SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6 SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6 SB_38638| Best HMM Match : zf-B_box (HMM E-Value=6.8e-18) 28 8.6 >SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 263 Score = 104 bits (250), Expect = 6e-23 Identities = 45/61 (73%), Positives = 53/61 (86%) Frame = -1 Query: 183 VNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTL 4 VNPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ L Sbjct: 28 VNPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQAL 87 Query: 3 D 1 D Sbjct: 88 D 88 >SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23) Length = 131 Score = 73.3 bits (172), Expect = 2e-13 Identities = 39/72 (54%), Positives = 47/72 (65%) Frame = +3 Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653 +KS L VSQ + NLR Y+ KKY PLDLR K TRAMR++LTK EA KT K+ +K Sbjct: 59 RKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118 Query: 654 KSLFPPRVYAVK 689 + F R YAVK Sbjct: 119 LAHFSLRKYAVK 130 Score = 55.2 bits (127), Expect = 5e-08 Identities = 31/58 (53%), Positives = 35/58 (60%) Frame = +1 Query: 331 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504 KVK ELR K + LRVAKVTGG ASKLSKI+VVRK++ARV V Sbjct: 11 KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTV 68 >SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1) Length = 311 Score = 28.7 bits (61), Expect = 4.9 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Frame = +3 Query: 462 DPCCKKSYRTCLHCVSQKMKVNLRNHY---KNKKYKPLDLRAKKTR-AMRKALTKHEAKI 629 DP + + L K N+ + Y +N+K DL K T +M + KH AK+ Sbjct: 74 DPLNMRLHNLNLPLFILKSLTNIISFYLKDENEKLWLSDLVEKSTPCSMDNSRQKHIAKL 133 Query: 630 KTRKEIRKKSLFPPRVYA 683 R E++ S PP V A Sbjct: 134 LLRSEMKGNSELPPHVQA 151 >SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 655 Score = 27.9 bits (59), Expect = 8.6 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 58 TSASSESAPSDQPIYPDTG 2 T+ASSE+APS P PD G Sbjct: 43 TAASSEAAPSSAPSMPDYG 61 >SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1418 Score = 27.9 bits (59), Expect = 8.6 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +3 Query: 492 CLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653 C V K N N +KN+K +D K ++KAL + K+I K Sbjct: 530 CCGLVGYKYLCNFENKFKNRKEDIVDRSKKVDEGVKKALGFKSGMEELAKDIGK 583 >SB_38638| Best HMM Match : zf-B_box (HMM E-Value=6.8e-18) Length = 364 Score = 27.9 bits (59), Expect = 8.6 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +3 Query: 459 QDPCCKKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKA--LTKHEAKI 629 Q C + + C HC+S ++ L H+ ++++ K AM K TKHE ++ Sbjct: 82 QGRCNECDHFVCEHCISAHKRLRLLQHHTLLSLD--EIKSGKLLAMSKTSFCTKHEGEV 138 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,590,454 Number of Sequences: 59808 Number of extensions: 361546 Number of successful extensions: 1106 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1012 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1106 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1877743452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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