Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20957
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   6e-23
SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         73   2e-13
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  29   4.9  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_38638| Best HMM Match : zf-B_box (HMM E-Value=6.8e-18)              28   8.6  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  104 bits (250), Expect = 6e-23
 Identities = 45/61 (73%), Positives = 53/61 (86%)
 Frame = -1

Query: 183 VNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTL 4
           VNPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ L
Sbjct: 28  VNPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQAL 87

Query: 3   D 1
           D
Sbjct: 88  D 88


>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 39/72 (54%), Positives = 47/72 (65%)
 Frame = +3

Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           +KS    L  VSQ  + NLR  Y+ KKY PLDLR K TRAMR++LTK EA  KT K+ +K
Sbjct: 59  RKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118

Query: 654 KSLFPPRVYAVK 689
            + F  R YAVK
Sbjct: 119 LAHFSLRKYAVK 130



 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 31/58 (53%), Positives = 35/58 (60%)
 Frame = +1

Query: 331 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTV 68


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +3

Query: 462 DPCCKKSYRTCLHCVSQKMKVNLRNHY---KNKKYKPLDLRAKKTR-AMRKALTKHEAKI 629
           DP   + +   L     K   N+ + Y   +N+K    DL  K T  +M  +  KH AK+
Sbjct: 74  DPLNMRLHNLNLPLFILKSLTNIISFYLKDENEKLWLSDLVEKSTPCSMDNSRQKHIAKL 133

Query: 630 KTRKEIRKKSLFPPRVYA 683
             R E++  S  PP V A
Sbjct: 134 LLRSEMKGNSELPPHVQA 151


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 58 TSASSESAPSDQPIYPDTG 2
          T+ASSE+APS  P  PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 492 CLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           C   V  K   N  N +KN+K   +D   K    ++KAL       +  K+I K
Sbjct: 530 CCGLVGYKYLCNFENKFKNRKEDIVDRSKKVDEGVKKALGFKSGMEELAKDIGK 583


>SB_38638| Best HMM Match : zf-B_box (HMM E-Value=6.8e-18)
          Length = 364

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 459 QDPCCKKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKA--LTKHEAKI 629
           Q  C +  +  C HC+S   ++ L  H+        ++++ K  AM K    TKHE ++
Sbjct: 82  QGRCNECDHFVCEHCISAHKRLRLLQHHTLLSLD--EIKSGKLLAMSKTSFCTKHEGEV 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,590,454
Number of Sequences: 59808
Number of extensions: 361546
Number of successful extensions: 1106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)