Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20957
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 9e-22
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 100 9e-22
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 100 9e-22
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 100 9e-22
L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal prote... 63 2e-10
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 2.5
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 2.5
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (240), Expect = 9e-22
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = -1
Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190
Query: 6 LD 1
LD
Sbjct: 191 LD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 100 bits (240), Expect = 9e-22
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = -1
Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 131 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 190
Query: 6 LD 1
LD
Sbjct: 191 LD 192
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 100 bits (240), Expect = 9e-22
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = -1
Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 28 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87
Query: 6 LD 1
LD
Sbjct: 88 LD 89
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 100 bits (240), Expect = 9e-22
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = -1
Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
+ NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 28 VKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTA 87
Query: 6 LD 1
LD
Sbjct: 88 LD 89
>L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 35 protein.
Length = 123
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/73 (42%), Positives = 44/73 (60%)
Frame = +3
Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
+K+ L ++Q K LR Y + KYKP+DLR KKTRA+R+ LT HE +++ K+ K
Sbjct: 51 RKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAK 110
Query: 654 KSLFPPRVYAVKA 692
R +AVKA
Sbjct: 111 SRNQAVRKFAVKA 123
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/58 (50%), Positives = 33/58 (56%)
Frame = +1
Query: 331 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
K+KC LR + LRV+KVTGG ASKLSKIRVVRK IAR+ V
Sbjct: 3 KLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 543 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 656
K ++ +D K+ R +RKA+TK E KIK KE K
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 543 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 656
K ++ +D K+ R +RKA+TK E KIK KE K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 543 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 656
K ++ +D K+ R +RKA+TK E KIK KE K
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,356
Number of Sequences: 27780
Number of extensions: 271408
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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