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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20957
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    97   1e-20
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            96   2e-20
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo...    83   1e-16
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)            83   2e-16
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi...    81   7e-16
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari...    80   1e-15
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari...    80   1e-15
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof...    29   2.3  
At3g02690.1 68416.m00260 integral membrane family protein simila...    29   4.0  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    29   4.0  
At2g33250.1 68415.m04073 expressed protein                             29   4.0  
At5g15680.1 68418.m01834 expressed protein                             28   5.3  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 39/62 (62%), Positives = 52/62 (83%)
 Frame = -1

Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
           + NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+T
Sbjct: 18  VTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 77

Query: 6   LD 1
           LD
Sbjct: 78  LD 79


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 39/62 (62%), Positives = 52/62 (83%)
 Frame = -1

Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
           + NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+T
Sbjct: 19  VSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 78

Query: 6   LD 1
           LD
Sbjct: 79  LD 80



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 552 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 644
           KY+P D  AKK R ++KA  + E K    K+
Sbjct: 93  KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123


>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
           ribosomal protein L35- cytosolic, Arabidopsis thaliana,
           PIR:T00549
          Length = 123

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 40/72 (55%), Positives = 50/72 (69%)
 Frame = +3

Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           +KS    L  +SQK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51  RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110

Query: 654 KSLFPPRVYAVK 689
           +  FP R YA+K
Sbjct: 111 EMYFPVRKYAIK 122



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 30/76 (39%), Positives = 41/76 (53%)
 Frame = +1

Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
           + ++K  ELR K                  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 505 YPRR*RSILETTTKTR 552
             ++ +S L    K +
Sbjct: 61  ISQKQKSALREAYKNK 76


>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
          Length = 123

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 40/72 (55%), Positives = 50/72 (69%)
 Frame = +3

Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           +KS    L  +SQK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51  RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110

Query: 654 KSLFPPRVYAVK 689
           +  FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 30/76 (39%), Positives = 41/76 (53%)
 Frame = +1

Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
           + ++K  ELR K                  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 505 YPRR*RSILETTTKTR 552
             ++ +S L    K +
Sbjct: 61  ISQKQKSALREAYKNK 76


>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
           to 60S ribosomal protein L35 GB:AAC27830
          Length = 123

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 40/72 (55%), Positives = 49/72 (68%)
 Frame = +3

Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           +KS    L   SQK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51  RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110

Query: 654 KSLFPPRVYAVK 689
           +  FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/76 (39%), Positives = 41/76 (53%)
 Frame = +1

Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
           + ++K  ELR K                  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 505 YPRR*RSILETTTKTR 552
             ++ +S L    K +
Sbjct: 61  SSQKQKSALREAYKNK 76


>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 40/72 (55%), Positives = 48/72 (66%)
 Frame = +3

Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           +KS    L   SQK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51  RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110

Query: 654 KSLFPPRVYAVK 689
              FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 30/76 (39%), Positives = 42/76 (55%)
 Frame = +1

Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
           + ++K  ELR K                 +LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 505 YPRR*RSILETTTKTR 552
             ++ +S L    K +
Sbjct: 61  SSQKQKSALREAYKNK 76


>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 40/72 (55%), Positives = 48/72 (66%)
 Frame = +3

Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
           +KS    L   SQK K  LR  YKNKK  PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51  RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110

Query: 654 KSLFPPRVYAVK 689
              FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 30/76 (39%), Positives = 42/76 (55%)
 Frame = +1

Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
           + ++K  ELR K                 +LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 505 YPRR*RSILETTTKTR 552
             ++ +S L    K +
Sbjct: 61  SSQKQKSALREAYKNK 76


>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 366

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +3

Query: 492 CLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 644
           C+      +  ++ +H   + YKPL++RA+  + +R A  ++    +TRK+
Sbjct: 285 CVSATVTHVDWSVNDHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335


>At3g02690.1 68416.m00260 integral membrane family protein similar
           to PecM protein (GI:5852331) {Vogesella indigofera} and
           PecM protein (SP:P42194) [Erwinia chrysanthemi]
          Length = 417

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 441 SCF*TVQDPCCKKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 620
           SCF    + C   + RT L CV+  +K +LR+   + K+  +  R      +R++ T + 
Sbjct: 17  SCFFASPNSCLSITRRTNLSCVNTSVK-SLRHSRFDSKHNLVKRRINGDSVVRRSTTSNN 75

Query: 621 AKIKTRKEIRKKSL 662
           +  +T       S+
Sbjct: 76  STEETESSSSSSSV 89


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 178 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 62
           S+L  + + LC    H  ++G V+  K + +Y H  PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489


>At2g33250.1 68415.m04073 expressed protein
          Length = 299

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 154 LWPLLEERIHDLLGLNLFDHQWGGGYFLPYLLLSFF 261
           LW +LEE + ++  L  F      GY LP+++LS F
Sbjct: 120 LWKILEEIVDNVWILKAFKSY---GYLLPFIILSLF 152


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = -3

Query: 220  PIGGQKG*AQEDRESSLRE---EAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSA 50
            P+ G  G     ++SS  E   + K L   +   A SG +Q   MA     P P G  +A
Sbjct: 2048 PVQGGTG-GSHPQDSSYSENGTDEKTLVPQTSFKARSGPLQYAMMAATMSQPFPLGAAAA 2106

Query: 49   SSESAPSD 26
             S   P D
Sbjct: 2107 ESGIPPRD 2114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,367
Number of Sequences: 28952
Number of extensions: 262248
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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