Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20957
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 97 1e-20
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 96 2e-20
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 83 1e-16
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 83 2e-16
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 81 7e-16
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 80 1e-15
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 80 1e-15
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 2.3
At3g02690.1 68416.m00260 integral membrane family protein simila... 29 4.0
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 4.0
At2g33250.1 68415.m04073 expressed protein 29 4.0
At5g15680.1 68418.m01834 expressed protein 28 5.3
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 97.1 bits (231), Expect = 1e-20
Identities = 39/62 (62%), Positives = 52/62 (83%)
Frame = -1
Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
+ NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+T
Sbjct: 18 VTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 77
Query: 6 LD 1
LD
Sbjct: 78 LD 79
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 96.3 bits (229), Expect = 2e-20
Identities = 39/62 (62%), Positives = 52/62 (83%)
Frame = -1
Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7
+ NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+T
Sbjct: 19 VSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 78
Query: 6 LD 1
LD
Sbjct: 79 LD 80
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 552 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 644
KY+P D AKK R ++KA + E K K+
Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 83.4 bits (197), Expect = 1e-16
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = +3
Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
+KS L +SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 654 KSLFPPRVYAVK 689
+ FP R YA+K
Sbjct: 111 EMYFPVRKYAIK 122
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/76 (39%), Positives = 41/76 (53%)
Frame = +1
Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
+ ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 505 YPRR*RSILETTTKTR 552
++ +S L K +
Sbjct: 61 ISQKQKSALREAYKNK 76
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = +3
Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
+KS L +SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 654 KSLFPPRVYAVK 689
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/76 (39%), Positives = 41/76 (53%)
Frame = +1
Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
+ ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 505 YPRR*RSILETTTKTR 552
++ +S L K +
Sbjct: 61 ISQKQKSALREAYKNK 76
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 81.0 bits (191), Expect = 7e-16
Identities = 40/72 (55%), Positives = 49/72 (68%)
Frame = +3
Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
+KS L SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 654 KSLFPPRVYAVK 689
+ FP R YA+K
Sbjct: 111 EMYFPIRKYAIK 122
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/76 (39%), Positives = 41/76 (53%)
Frame = +1
Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
+ ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 505 YPRR*RSILETTTKTR 552
++ +S L K +
Sbjct: 61 SSQKQKSALREAYKNK 76
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +3
Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
+KS L SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 654 KSLFPPRVYAVK 689
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = +1
Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
+ ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 505 YPRR*RSILETTTKTR 552
++ +S L K +
Sbjct: 61 SSQKQKSALREAYKNK 76
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/72 (55%), Positives = 48/72 (66%)
Frame = +3
Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653
+KS L SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K
Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110
Query: 654 KSLFPPRVYAVK 689
FP R YA+K
Sbjct: 111 DMYFPIRKYAIK 122
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = +1
Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504
+ ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 505 YPRR*RSILETTTKTR 552
++ +S L K +
Sbjct: 61 SSQKQKSALREAYKNK 76
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 492 CLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 644
C+ + ++ +H + YKPL++RA+ + +R A ++ +TRK+
Sbjct: 285 CVSATVTHVDWSVNDHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335
>At3g02690.1 68416.m00260 integral membrane family protein similar
to PecM protein (GI:5852331) {Vogesella indigofera} and
PecM protein (SP:P42194) [Erwinia chrysanthemi]
Length = 417
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 441 SCF*TVQDPCCKKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 620
SCF + C + RT L CV+ +K +LR+ + K+ + R +R++ T +
Sbjct: 17 SCFFASPNSCLSITRRTNLSCVNTSVK-SLRHSRFDSKHNLVKRRINGDSVVRRSTTSNN 75
Query: 621 AKIKTRKEIRKKSL 662
+ +T S+
Sbjct: 76 STEETESSSSSSSV 89
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 178 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 62
S+L + + LC H ++G V+ K + +Y H PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489
>At2g33250.1 68415.m04073 expressed protein
Length = 299
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 154 LWPLLEERIHDLLGLNLFDHQWGGGYFLPYLLLSFF 261
LW +LEE + ++ L F GY LP+++LS F
Sbjct: 120 LWKILEEIVDNVWILKAFKSY---GYLLPFIILSLF 152
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = -3
Query: 220 PIGGQKG*AQEDRESSLRE---EAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSA 50
P+ G G ++SS E + K L + A SG +Q MA P P G +A
Sbjct: 2048 PVQGGTG-GSHPQDSSYSENGTDEKTLVPQTSFKARSGPLQYAMMAATMSQPFPLGAAAA 2106
Query: 49 SSESAPSD 26
S P D
Sbjct: 2107 ESGIPPRD 2114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,367
Number of Sequences: 28952
Number of extensions: 262248
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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