BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20957 (711 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 97 1e-20 At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 96 2e-20 At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 83 1e-16 At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 83 2e-16 At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 81 7e-16 At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 80 1e-15 At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 80 1e-15 At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 2.3 At3g02690.1 68416.m00260 integral membrane family protein simila... 29 4.0 At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 4.0 At2g33250.1 68415.m04073 expressed protein 29 4.0 At5g15680.1 68418.m01834 expressed protein 28 5.3 >At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA Length = 256 Score = 97.1 bits (231), Expect = 1e-20 Identities = 39/62 (62%), Positives = 52/62 (83%) Frame = -1 Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7 + NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+T Sbjct: 18 VTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 77 Query: 6 LD 1 LD Sbjct: 78 LD 79 >At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) Length = 257 Score = 96.3 bits (229), Expect = 2e-20 Identities = 39/62 (62%), Positives = 52/62 (83%) Frame = -1 Query: 186 IVNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQT 7 + NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+T Sbjct: 19 VSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKT 78 Query: 6 LD 1 LD Sbjct: 79 LD 80 Score = 27.5 bits (58), Expect = 9.3 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 552 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 644 KY+P D AKK R ++KA + E K K+ Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123 >At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribosomal protein L35- cytosolic, Arabidopsis thaliana, PIR:T00549 Length = 123 Score = 83.4 bits (197), Expect = 1e-16 Identities = 40/72 (55%), Positives = 50/72 (69%) Frame = +3 Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653 +KS L +SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110 Query: 654 KSLFPPRVYAVK 689 + FP R YA+K Sbjct: 111 EMYFPVRKYAIK 122 Score = 52.4 bits (120), Expect = 3e-07 Identities = 30/76 (39%), Positives = 41/76 (53%) Frame = +1 Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504 + ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60 Query: 505 YPRR*RSILETTTKTR 552 ++ +S L K + Sbjct: 61 ISQKQKSALREAYKNK 76 >At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) Length = 123 Score = 83.0 bits (196), Expect = 2e-16 Identities = 40/72 (55%), Positives = 50/72 (69%) Frame = +3 Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653 +KS L +SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K Sbjct: 51 RKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110 Query: 654 KSLFPPRVYAVK 689 + FP R YA+K Sbjct: 111 EMYFPIRKYAIK 122 Score = 52.4 bits (120), Expect = 3e-07 Identities = 30/76 (39%), Positives = 41/76 (53%) Frame = +1 Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504 + ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60 Query: 505 YPRR*RSILETTTKTR 552 ++ +S L K + Sbjct: 61 ISQKQKSALREAYKNK 76 >At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar to 60S ribosomal protein L35 GB:AAC27830 Length = 123 Score = 81.0 bits (191), Expect = 7e-16 Identities = 40/72 (55%), Positives = 49/72 (68%) Frame = +3 Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653 +KS L SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110 Query: 654 KSLFPPRVYAVK 689 + FP R YA+K Sbjct: 111 EMYFPIRKYAIK 122 Score = 52.0 bits (119), Expect = 4e-07 Identities = 30/76 (39%), Positives = 41/76 (53%) Frame = +1 Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504 + ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60 Query: 505 YPRR*RSILETTTKTR 552 ++ +S L K + Sbjct: 61 SSQKQKSALREAYKNK 76 >At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various ribosomal L35 proteins Length = 123 Score = 80.2 bits (189), Expect = 1e-15 Identities = 40/72 (55%), Positives = 48/72 (66%) Frame = +3 Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653 +KS L SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110 Query: 654 KSLFPPRVYAVK 689 FP R YA+K Sbjct: 111 DMYFPIRKYAIK 122 Score = 53.6 bits (123), Expect = 1e-07 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = +1 Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504 + ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60 Query: 505 YPRR*RSILETTTKTR 552 ++ +S L K + Sbjct: 61 SSQKQKSALREAYKNK 76 >At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various ribosomal L35 proteins Length = 123 Score = 80.2 bits (189), Expect = 1e-15 Identities = 40/72 (55%), Positives = 48/72 (66%) Frame = +3 Query: 474 KKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 653 +KS L SQK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K Sbjct: 51 RKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK 110 Query: 654 KSLFPPRVYAVK 689 FP R YA+K Sbjct: 111 DMYFPIRKYAIK 122 Score = 53.6 bits (123), Expect = 1e-07 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = +1 Query: 325 IGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 504 + ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60 Query: 505 YPRR*RSILETTTKTR 552 ++ +S L K + Sbjct: 61 SSQKQKSALREAYKNK 76 >At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 Length = 366 Score = 29.5 bits (63), Expect = 2.3 Identities = 13/51 (25%), Positives = 28/51 (54%) Frame = +3 Query: 492 CLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 644 C+ + ++ +H + YKPL++RA+ + +R A ++ +TRK+ Sbjct: 285 CVSATVTHVDWSVNDHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335 >At3g02690.1 68416.m00260 integral membrane family protein similar to PecM protein (GI:5852331) {Vogesella indigofera} and PecM protein (SP:P42194) [Erwinia chrysanthemi] Length = 417 Score = 28.7 bits (61), Expect = 4.0 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = +3 Query: 441 SCF*TVQDPCCKKSYRTCLHCVSQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 620 SCF + C + RT L CV+ +K +LR+ + K+ + R +R++ T + Sbjct: 17 SCFFASPNSCLSITRRTNLSCVNTSVK-SLRHSRFDSKHNLVKRRINGDSVVRRSTTSNN 75 Query: 621 AKIKTRKEIRKKSL 662 + +T S+ Sbjct: 76 STEETESSSSSSSV 89 >At2g34240.1 68415.m04189 hypothetical protein contains Pfam profiles PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 712 Score = 28.7 bits (61), Expect = 4.0 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 178 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 62 S+L + + LC H ++G V+ K + +Y H PEG Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489 >At2g33250.1 68415.m04073 expressed protein Length = 299 Score = 28.7 bits (61), Expect = 4.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 154 LWPLLEERIHDLLGLNLFDHQWGGGYFLPYLLLSFF 261 LW +LEE + ++ L F GY LP+++LS F Sbjct: 120 LWKILEEIVDNVWILKAFKSY---GYLLPFIILSLF 152 >At5g15680.1 68418.m01834 expressed protein Length = 2151 Score = 28.3 bits (60), Expect = 5.3 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Frame = -3 Query: 220 PIGGQKG*AQEDRESSLRE---EAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSA 50 P+ G G ++SS E + K L + A SG +Q MA P P G +A Sbjct: 2048 PVQGGTG-GSHPQDSSYSENGTDEKTLVPQTSFKARSGPLQYAMMAATMSQPFPLGAAAA 2106 Query: 49 SSESAPSD 26 S P D Sbjct: 2107 ESGIPPRD 2114 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,865,367 Number of Sequences: 28952 Number of extensions: 262248 Number of successful extensions: 815 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 815 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1535986264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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