Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20956
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   7.2  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 492 ITGDDTVDERANEHND 539
           I G+  +DE+A EH +
Sbjct: 172 IVGESVIDEKAEEHKE 187


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 517 SSTVSSPVIGLP*CSAGSLSPRLGVE*ALP 428
           S TVS   +  P   +G+LSP++  + A P
Sbjct: 88  SPTVSGSEMSSPGAGSGNLSPQIQTQVARP 117


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 517 SSTVSSPVIGLP*CSAGSLSPRLGVE*ALP 428
           S TVS   +  P   +G+LSP++  + A P
Sbjct: 88  SPTVSGSEMSSPGAGSGNLSPQIQTQVARP 117


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 492 ITGDDTVDERANEHND 539
           + GD  +DE A EH +
Sbjct: 180 VAGDKVLDENAAEHRE 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,055
Number of Sequences: 336
Number of extensions: 3515
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)