Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20956
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 28 1.1
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 28 1.5
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 27 1.9
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 4.5
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 26 4.5
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.9
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.9
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.9
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 7.9
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 7.9
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +3
Query: 336 LITDTIRSNIQFGDSEMNG-----GSPTHSPAK 419
++ DT R I+F DS +NG G+P +PAK
Sbjct: 36 VMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAK 68
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 372 GDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDDTVDERANEH 533
G +E + G T S N S+ +PS ++P E +DT RA +H
Sbjct: 32 GTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQRKRTFPLNDTHSSRARQH 85
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 293 ETFRTGSEQWTRFSIDHRHH 352
+ F G+ +W+ F I+H HH
Sbjct: 160 KAFYWGTSEWSAFEIEHAHH 179
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 463 GSQPNTKATLSPVTIQSMNGQMNTMTSINGTSNIIYYNRVPP 588
G P + LSP +I+ N N + + N+ + +VPP
Sbjct: 175 GISPQSNLHLSPNSIEKPNMHQNVLHNDRSADNLNHRYQVPP 216
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 336 LITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSA 437
L+T + + + GD MNG S A +MN S+
Sbjct: 457 LLTGSWYNGVSIGDCIMNGHSTARKLASLMNSSS 490
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 439 IRHPVEVRGSQPNTKATLSPVTIQSMNGQMNTMTSINGTS 558
+RHP+ + ++P T + Q N++T++N T+
Sbjct: 180 LRHPILLSETEPGTPTKNDSPAYIGLPSQPNSITTLNNTN 219
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 458 TSTGCRISASVHHLGGRVRRTSAVHFRITKLD 363
+STG ++S S+ L + S H ++K+D
Sbjct: 79 SSTGRKVSGSIQRLASNFKNPSNPHADVSKID 110
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 14 VYARIPSHSRQRAVSTPSVESSY 82
++AR+P + + TP V+SSY
Sbjct: 757 IFARMPKRIYSKILCTPEVDSSY 779
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 42 GNAQCLPRVLNRPIILNNNGN--LRSIQARRALQDR 143
G + LP+ N P+ N N N L S A A Q+R
Sbjct: 100 GYIEYLPKTFNTPLYFNENDNAFLISTNAYSAAQER 135
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 396 SPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPI 494
SP + P + + ++ +TPS +RE A H NPI
Sbjct: 412 SPFNKPNSVHSEASRNTPSSIDRENASH-SNPI 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,083
Number of Sequences: 5004
Number of extensions: 55743
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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