BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20956 (692 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 31 0.66 12_02_1261 + 27410921-27413401 30 1.5 11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 29 3.5 06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 29 4.6 01_05_0551 + 23169751-23170491 29 4.6 09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 28 6.1 04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386... 28 6.1 12_01_0070 - 602302-602529,603210-603374 28 8.1 10_02_0110 - 5371536-5372882 28 8.1 04_01_0176 + 2003707-2004130,2004689-2004861 28 8.1 02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 28 8.1 >07_03_0770 - 21375099-21375122,21375321-21375448,21375541-21375672, 21377016-21377874 Length = 380 Score = 31.5 bits (68), Expect = 0.66 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -1 Query: 353 DGVGDQWRNGSIARCLSEKSRVSVTRTCRCVADTRWRAMPFFLGLPSVISPLKISAM 183 DG+ DQW G + E +RVS R C + PF+ G P V+ P+K + Sbjct: 221 DGLVDQWWKGFLFPRNGEGARVSGPR---CSLRSELGPGPFYTGRPMVLLPVKADGL 274 >12_02_1261 + 27410921-27413401 Length = 826 Score = 30.3 bits (65), Expect = 1.5 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = +3 Query: 390 GGSPTHSPAKMMNGS----AYSTPSRGEREPAEH*GNP 491 G + HS + N + AYSTP + +++ AEH GNP Sbjct: 633 GANVNHSSGEATNSAFPDIAYSTPKKKKKKIAEHFGNP 670 >11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155, 3650306-3650815,3651700-3653757 Length = 968 Score = 29.1 bits (62), Expect = 3.5 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +1 Query: 130 LYKIGHGKNRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLT 291 +Y++ HG +P+AP+ + G+ D S ++NG A R V LT Sbjct: 159 IYRLPHGDQLLPDAPE-VVERALTGEQ-DASARRNGFLMLCACAQERAVAYLLT 210 >06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815, 2386852-2387034,2388388-2389044 Length = 690 Score = 28.7 bits (61), Expect = 4.6 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +1 Query: 166 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFSDRQRAMDPFLH*SP 345 N +C+A+ +GD++ GS + +A R +R L F + +R +D +P Sbjct: 555 NCVTTCVAKAISGDLSAGSDDGLAGLARAAAAIQRAIREGLEVPFGNSERWLDGATATTP 614 Query: 346 TPSAVTSS 369 + T S Sbjct: 615 PVRSFTRS 622 >01_05_0551 + 23169751-23170491 Length = 246 Score = 28.7 bits (61), Expect = 4.6 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Frame = +3 Query: 306 QAASNGPVSPLITDTIRS-NIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH* 482 QAA+ V + D RS I GD+ P SP K +A T S AE Sbjct: 82 QAATLSDVDRFLFDNFRSLYIHDGDNHQQRRQPPPSPGKFTQPAAAETSSSRSESVAEDA 141 Query: 483 GNPITGDD 506 +GD+ Sbjct: 142 RGTSSGDE 149 >09_06_0059 - 20584196-20584288,20584389-20585055,20585411-20585732, 20585862-20586000,20586261-20586322,20586371-20586434, 20586674-20586826,20586952-20587082,20587175-20587336, 20588060-20588264 Length = 665 Score = 28.3 bits (60), Expect = 6.1 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 312 ASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGERE 467 +++ P S T S I GD++ S TH + NG + TPS+ +RE Sbjct: 406 STSSPFSLYNCRTASSTINAGDAQACSTSATHIDLENKNGDS-KTPSQDKRE 456 >04_04_0861 + 28836544-28836609,28838191-28838264,28838551-28838671, 28838832-28839143,28839241-28839345,28839447-28839901, 28840116-28840417,28840589-28840767,28841256-28841446, 28841595-28841728,28841875-28842113 Length = 725 Score = 28.3 bits (60), Expect = 6.1 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = +3 Query: 486 NPITGDDTVDERANEHNDVN*WHQQYYLLQPRAARRLFIWTLVDYSLTTTLS 641 N DD +E N H Y LL P +L I+ ++ Y++ LS Sbjct: 505 NAEDNDDNEEESKNSHGPATSISSAYKLLTPSVKVQLLIYFMLKYAMEILLS 556 >12_01_0070 - 602302-602529,603210-603374 Length = 130 Score = 27.9 bits (59), Expect = 8.1 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 380 RITKLDVTADGVGDQWRNGSIARCLSEKSR 291 R+TKL+ T G+ D W RC E+++ Sbjct: 46 RLTKLNSTTKGLRDAWEEVKQMRCREEETK 75 >10_02_0110 - 5371536-5372882 Length = 448 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 489 GCLSVRLAPSHLDWVSNKRFRSSSWRESA*DFR 391 G + RLAP H W+S +R R + R + D R Sbjct: 11 GAAAARLAPYHKGWLSRRRRRGRTNRRARNDDR 43 >04_01_0176 + 2003707-2004130,2004689-2004861 Length = 198 Score = 27.9 bits (59), Expect = 8.1 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%) Frame = -2 Query: 454 RLGVE*ALPFIILAGECVGLPPFISE------SPNWM 362 +LG ALPFI+ G C L + E SP WM Sbjct: 99 QLGCRQALPFIVPTGRCASLAAVVEEISGRRASPPWM 135 >02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097, 7281182-7281277,7281378-7281459,7281553-7283037, 7283376-7283450,7283521-7283598,7283708-7283791, 7283885-7283965,7284073-7284291,7284398-7284648, 7284748-7284796 Length = 997 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = +1 Query: 166 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFS 303 NAP + +FN + + +KNG R++ R V + + R S Sbjct: 201 NAPTQSLLGVFNSILDESIERKNGQIPYRIACLLRKVILEIERRIS 246 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,448,694 Number of Sequences: 37544 Number of extensions: 415961 Number of successful extensions: 1143 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1140 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1768474200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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