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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20956
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756...    31   0.66 
12_02_1261 + 27410921-27413401                                         30   1.5  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    29   3.5  
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238...    29   4.6  
01_05_0551 + 23169751-23170491                                         29   4.6  
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857...    28   6.1  
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386...    28   6.1  
12_01_0070 - 602302-602529,603210-603374                               28   8.1  
10_02_0110 - 5371536-5372882                                           28   8.1  
04_01_0176 + 2003707-2004130,2004689-2004861                           28   8.1  
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728...    28   8.1  

>07_03_0770 -
           21375099-21375122,21375321-21375448,21375541-21375672,
           21377016-21377874
          Length = 380

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 353 DGVGDQWRNGSIARCLSEKSRVSVTRTCRCVADTRWRAMPFFLGLPSVISPLKISAM 183
           DG+ DQW  G +     E +RVS  R   C   +     PF+ G P V+ P+K   +
Sbjct: 221 DGLVDQWWKGFLFPRNGEGARVSGPR---CSLRSELGPGPFYTGRPMVLLPVKADGL 274


>12_02_1261 + 27410921-27413401
          Length = 826

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 390 GGSPTHSPAKMMNGS----AYSTPSRGEREPAEH*GNP 491
           G +  HS  +  N +    AYSTP + +++ AEH GNP
Sbjct: 633 GANVNHSSGEATNSAFPDIAYSTPKKKKKKIAEHFGNP 670


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 130 LYKIGHGKNRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLT 291
           +Y++ HG   +P+AP+  +     G+  D S ++NG       A  R V   LT
Sbjct: 159 IYRLPHGDQLLPDAPE-VVERALTGEQ-DASARRNGFLMLCACAQERAVAYLLT 210


>06_01_0329 +
           2383305-2384057,2385423-2385469,2386383-2386815,
           2386852-2387034,2388388-2389044
          Length = 690

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +1

Query: 166 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFSDRQRAMDPFLH*SP 345
           N   +C+A+  +GD++ GS        +  +A  R +R  L   F + +R +D     +P
Sbjct: 555 NCVTTCVAKAISGDLSAGSDDGLAGLARAAAAIQRAIREGLEVPFGNSERWLDGATATTP 614

Query: 346 TPSAVTSS 369
              + T S
Sbjct: 615 PVRSFTRS 622


>01_05_0551 + 23169751-23170491
          Length = 246

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +3

Query: 306 QAASNGPVSPLITDTIRS-NIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH* 482
           QAA+   V   + D  RS  I  GD+      P  SP K    +A  T S      AE  
Sbjct: 82  QAATLSDVDRFLFDNFRSLYIHDGDNHQQRRQPPPSPGKFTQPAAAETSSSRSESVAEDA 141

Query: 483 GNPITGDD 506
               +GD+
Sbjct: 142 RGTSSGDE 149


>09_06_0059 -
           20584196-20584288,20584389-20585055,20585411-20585732,
           20585862-20586000,20586261-20586322,20586371-20586434,
           20586674-20586826,20586952-20587082,20587175-20587336,
           20588060-20588264
          Length = 665

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 312 ASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGERE 467
           +++ P S     T  S I  GD++    S TH   +  NG +  TPS+ +RE
Sbjct: 406 STSSPFSLYNCRTASSTINAGDAQACSTSATHIDLENKNGDS-KTPSQDKRE 456


>04_04_0861 +
           28836544-28836609,28838191-28838264,28838551-28838671,
           28838832-28839143,28839241-28839345,28839447-28839901,
           28840116-28840417,28840589-28840767,28841256-28841446,
           28841595-28841728,28841875-28842113
          Length = 725

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 486 NPITGDDTVDERANEHNDVN*WHQQYYLLQPRAARRLFIWTLVDYSLTTTLS 641
           N    DD  +E  N H         Y LL P    +L I+ ++ Y++   LS
Sbjct: 505 NAEDNDDNEEESKNSHGPATSISSAYKLLTPSVKVQLLIYFMLKYAMEILLS 556


>12_01_0070 - 602302-602529,603210-603374
          Length = 130

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 380 RITKLDVTADGVGDQWRNGSIARCLSEKSR 291
           R+TKL+ T  G+ D W      RC  E+++
Sbjct: 46  RLTKLNSTTKGLRDAWEEVKQMRCREEETK 75


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 489 GCLSVRLAPSHLDWVSNKRFRSSSWRESA*DFR 391
           G  + RLAP H  W+S +R R  + R +  D R
Sbjct: 11  GAAAARLAPYHKGWLSRRRRRGRTNRRARNDDR 43


>04_01_0176 + 2003707-2004130,2004689-2004861
          Length = 198

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
 Frame = -2

Query: 454 RLGVE*ALPFIILAGECVGLPPFISE------SPNWM 362
           +LG   ALPFI+  G C  L   + E      SP WM
Sbjct: 99  QLGCRQALPFIVPTGRCASLAAVVEEISGRRASPPWM 135


>02_02_0157 -
           7280335-7280541,7280656-7280762,7280918-7281097,
           7281182-7281277,7281378-7281459,7281553-7283037,
           7283376-7283450,7283521-7283598,7283708-7283791,
           7283885-7283965,7284073-7284291,7284398-7284648,
           7284748-7284796
          Length = 997

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 166 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFS 303
           NAP   +  +FN  + +   +KNG    R++   R V + + R  S
Sbjct: 201 NAPTQSLLGVFNSILDESIERKNGQIPYRIACLLRKVILEIERRIS 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,694
Number of Sequences: 37544
Number of extensions: 415961
Number of successful extensions: 1143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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