Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20956
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 31 0.66
12_02_1261 + 27410921-27413401 30 1.5
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 29 3.5
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 29 4.6
01_05_0551 + 23169751-23170491 29 4.6
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857... 28 6.1
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386... 28 6.1
12_01_0070 - 602302-602529,603210-603374 28 8.1
10_02_0110 - 5371536-5372882 28 8.1
04_01_0176 + 2003707-2004130,2004689-2004861 28 8.1
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 28 8.1
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 353 DGVGDQWRNGSIARCLSEKSRVSVTRTCRCVADTRWRAMPFFLGLPSVISPLKISAM 183
DG+ DQW G + E +RVS R C + PF+ G P V+ P+K +
Sbjct: 221 DGLVDQWWKGFLFPRNGEGARVSGPR---CSLRSELGPGPFYTGRPMVLLPVKADGL 274
>12_02_1261 + 27410921-27413401
Length = 826
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +3
Query: 390 GGSPTHSPAKMMNGS----AYSTPSRGEREPAEH*GNP 491
G + HS + N + AYSTP + +++ AEH GNP
Sbjct: 633 GANVNHSSGEATNSAFPDIAYSTPKKKKKKIAEHFGNP 670
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 130 LYKIGHGKNRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLT 291
+Y++ HG +P+AP+ + G+ D S ++NG A R V LT
Sbjct: 159 IYRLPHGDQLLPDAPE-VVERALTGEQ-DASARRNGFLMLCACAQERAVAYLLT 210
>06_01_0329 +
2383305-2384057,2385423-2385469,2386383-2386815,
2386852-2387034,2388388-2389044
Length = 690
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 166 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFSDRQRAMDPFLH*SP 345
N +C+A+ +GD++ GS + +A R +R L F + +R +D +P
Sbjct: 555 NCVTTCVAKAISGDLSAGSDDGLAGLARAAAAIQRAIREGLEVPFGNSERWLDGATATTP 614
Query: 346 TPSAVTSS 369
+ T S
Sbjct: 615 PVRSFTRS 622
>01_05_0551 + 23169751-23170491
Length = 246
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 306 QAASNGPVSPLITDTIRS-NIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH* 482
QAA+ V + D RS I GD+ P SP K +A T S AE
Sbjct: 82 QAATLSDVDRFLFDNFRSLYIHDGDNHQQRRQPPPSPGKFTQPAAAETSSSRSESVAEDA 141
Query: 483 GNPITGDD 506
+GD+
Sbjct: 142 RGTSSGDE 149
>09_06_0059 -
20584196-20584288,20584389-20585055,20585411-20585732,
20585862-20586000,20586261-20586322,20586371-20586434,
20586674-20586826,20586952-20587082,20587175-20587336,
20588060-20588264
Length = 665
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 312 ASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGERE 467
+++ P S T S I GD++ S TH + NG + TPS+ +RE
Sbjct: 406 STSSPFSLYNCRTASSTINAGDAQACSTSATHIDLENKNGDS-KTPSQDKRE 456
>04_04_0861 +
28836544-28836609,28838191-28838264,28838551-28838671,
28838832-28839143,28839241-28839345,28839447-28839901,
28840116-28840417,28840589-28840767,28841256-28841446,
28841595-28841728,28841875-28842113
Length = 725
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 486 NPITGDDTVDERANEHNDVN*WHQQYYLLQPRAARRLFIWTLVDYSLTTTLS 641
N DD +E N H Y LL P +L I+ ++ Y++ LS
Sbjct: 505 NAEDNDDNEEESKNSHGPATSISSAYKLLTPSVKVQLLIYFMLKYAMEILLS 556
>12_01_0070 - 602302-602529,603210-603374
Length = 130
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 380 RITKLDVTADGVGDQWRNGSIARCLSEKSR 291
R+TKL+ T G+ D W RC E+++
Sbjct: 46 RLTKLNSTTKGLRDAWEEVKQMRCREEETK 75
>10_02_0110 - 5371536-5372882
Length = 448
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 489 GCLSVRLAPSHLDWVSNKRFRSSSWRESA*DFR 391
G + RLAP H W+S +R R + R + D R
Sbjct: 11 GAAAARLAPYHKGWLSRRRRRGRTNRRARNDDR 43
>04_01_0176 + 2003707-2004130,2004689-2004861
Length = 198
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = -2
Query: 454 RLGVE*ALPFIILAGECVGLPPFISE------SPNWM 362
+LG ALPFI+ G C L + E SP WM
Sbjct: 99 QLGCRQALPFIVPTGRCASLAAVVEEISGRRASPPWM 135
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 166 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFS 303
NAP + +FN + + +KNG R++ R V + + R S
Sbjct: 201 NAPTQSLLGVFNSILDESIERKNGQIPYRIACLLRKVILEIERRIS 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,694
Number of Sequences: 37544
Number of extensions: 415961
Number of successful extensions: 1143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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