Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20956
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53805| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 30   2.0  
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)                28   6.2  
SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_53805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 12  LCTHVSLAIAGNAQCLPRVLNRPIILNNNGNLRSIQAR 125
           +C  +S A AG A  +P+V  RP++LN+     S + R
Sbjct: 42  ICMVISTASAGVAPIIPKVRPRPVMLNDEWGSSSCETR 79


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 333 PLITDTIRSNIQFGDSEMNGGSP--THSPAKMMNGSAYSTPSRGEREPA 473
           P  ++  +SN   GDS   G SP  T SPA++ + +  S+P+ G   PA
Sbjct: 488 PSFSEWKKSNESTGDSSSGGASPARTTSPARITSPARASSPA-GRASPA 535


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 315 SLPVRKVSSECHADVSVCRGHALARH--AVLLGAAIRHIAIEDF 190
           SLPV  V   CH +++V +G     H  A+ L A +  I   D+
Sbjct: 17  SLPVHFVDGSCHTNINVVKGRCPVSHDMAIELAALMAQIQYGDY 60


>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
          Length = 772

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 300 FGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 452
           F  + SNG +SP ++  + S++  G S   GGS T+    +  G +  T S
Sbjct: 264 FSSSLSNG-MSPSLSQGLSSSLSNGLSSYTGGSDTNGLGSLAAGYSQGTGS 313


>SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = +3

Query: 381 EMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDD-------TVDERANEHND 539
           E   G P+ S A++       T        + H   P+T DD       + DER +++ND
Sbjct: 403 EAKKGEPSSSNAQLAKAKGVITSESDSYSESNH-EQPVTSDDPETSKNKSFDERTSDYND 461

Query: 540 VN*W 551
           V  W
Sbjct: 462 VLPW 465


>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 485 ALVFGWLPLTSTGCRISASVHHLGGR 408
           A +F  LP+ ++ C    ++HH+GGR
Sbjct: 621 ATMFFTLPIVTSNCDGLKAIHHIGGR 646


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,188,768
Number of Sequences: 59808
Number of extensions: 455372
Number of successful extensions: 1253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)