Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20956
(692 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF460298-1|AAM83313.1| 66|Homo sapiens immunoglobulin heavy ch... 32 1.7
BC130432-1|AAI30433.1| 612|Homo sapiens otopetrin 1 protein. 32 2.2
BC130430-1|AAI30431.1| 612|Homo sapiens otopetrin 1 protein. 32 2.2
AJ245070-1|CAB44203.1| 127|Homo sapiens immunoglobulin gamma he... 30 6.8
AJ245067-1|CAB44200.1| 127|Homo sapiens immunoglobulin gamma he... 30 6.8
S53149-1|ABB72474.1| 391|Homo sapiens casein kinase II-alpha su... 30 9.0
M55265-1|AAA35503.1| 391|Homo sapiens casein kinase II alpha su... 30 9.0
J02853-1|AAA56821.1| 391|Homo sapiens casein kinase II alpha su... 30 9.0
BT019792-1|AAV38595.1| 391|Homo sapiens casein kinase 2, alpha ... 30 9.0
BC071167-1|AAH71167.1| 391|Homo sapiens casein kinase 2, alpha ... 30 9.0
BC053532-1|AAH53532.1| 391|Homo sapiens casein kinase 2, alpha ... 30 9.0
BC050036-1|AAH50036.1| 397|Homo sapiens CSNK2A1 protein protein. 30 9.0
BC011668-1|AAH11668.1| 391|Homo sapiens casein kinase 2, alpha ... 30 9.0
AL049761-3|CAB65624.1| 391|Homo sapiens casein kinase 2, alpha ... 30 9.0
AL049761-2|CAM28336.1| 255|Homo sapiens casein kinase 2, alpha ... 30 9.0
>AF460298-1|AAM83313.1| 66|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 66
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 478 TKATLSPVTIQSMNGQMNTMTSINGTSNIIYY-NRVPPGGYSSG 606
T+ T+S T S N + TMT+++ YY R+PPG YSSG
Sbjct: 16 TRLTISKDT--SKNQVVLTMTNMDPVDTATYYCARIPPGPYSSG 57
>BC130432-1|AAI30433.1| 612|Homo sapiens otopetrin 1 protein.
Length = 612
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 358 LRMVSVINGETGPLLAACPKS 296
LR+V+V NG T PL ++CPKS
Sbjct: 461 LRVVTVCNGNTMPLASSCPKS 481
>BC130430-1|AAI30431.1| 612|Homo sapiens otopetrin 1 protein.
Length = 612
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 358 LRMVSVINGETGPLLAACPKS 296
LR+V+V NG T PL ++CPKS
Sbjct: 461 LRVVTVCNGNTMPLASSCPKS 481
>AJ245070-1|CAB44203.1| 127|Homo sapiens immunoglobulin gamma heavy
chain variable region protein.
Length = 127
Score = 30.3 bits (65), Expect = 6.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 472 PNTKATLSPVTIQSMNGQMNTMTSINGTSNIIYYNRVPPGGYSSGLW 612
P+ K ++ S N TMTS+ +YY PG ++ G W
Sbjct: 63 PSLKNRITISADTSKNEISLTMTSVTAADTAVYYCATEPGRFAGGNW 109
>AJ245067-1|CAB44200.1| 127|Homo sapiens immunoglobulin gamma heavy
chain variable region protein.
Length = 127
Score = 30.3 bits (65), Expect = 6.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 472 PNTKATLSPVTIQSMNGQMNTMTSINGTSNIIYYNRVPPGGYSSGLW 612
P+ K ++ S N TMTS+ +YY PG ++ G W
Sbjct: 63 PSLKNRITISADTSKNEISLTMTSVTAADTAVYYCATEPGRFAGGNW 109
>S53149-1|ABB72474.1| 391|Homo sapiens casein kinase II-alpha
subunit protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>M55265-1|AAA35503.1| 391|Homo sapiens casein kinase II alpha
subunit protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>J02853-1|AAA56821.1| 391|Homo sapiens casein kinase II alpha
subunit protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>BT019792-1|AAV38595.1| 391|Homo sapiens casein kinase 2, alpha 1
polypeptide protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>BC071167-1|AAH71167.1| 391|Homo sapiens casein kinase 2, alpha 1
polypeptide protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>BC053532-1|AAH53532.1| 391|Homo sapiens casein kinase 2, alpha 1
polypeptide protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>BC050036-1|AAH50036.1| 397|Homo sapiens CSNK2A1 protein protein.
Length = 397
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>BC011668-1|AAH11668.1| 391|Homo sapiens casein kinase 2, alpha 1
polypeptide protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>AL049761-3|CAB65624.1| 391|Homo sapiens casein kinase 2, alpha 1
polypeptide protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 322 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 362
>AL049761-2|CAM28336.1| 255|Homo sapiens casein kinase 2, alpha 1
polypeptide protein.
Length = 255
Score = 29.9 bits (64), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 333 PLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNG-SAYSTPS 452
P ++ + G S M GGS S A MM+G S+ TPS
Sbjct: 186 PYFYTVVKDQARMGSSSMPGGSTPVSSANMMSGISSVPTPS 226
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,384,893
Number of Sequences: 237096
Number of extensions: 2159362
Number of successful extensions: 11863
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11863
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -