BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20956 (692 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical pr... 30 1.4 U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective sperm... 29 3.2 Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 27 9.6 Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 27 9.6 AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 27 9.6 >Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical protein ZC15.1 protein. Length = 875 Score = 30.3 bits (65), Expect = 1.4 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = +3 Query: 363 IQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDDTVDERANEHNDV 542 +++ E G+PT PA + E + P T +DT D+R NE ++ Sbjct: 423 VRYRPGEGTSGAPTLPPADDEADEQLAADEADEHPATDDAEEPPTVEDTEDQRQNELTEI 482 Query: 543 N 545 N Sbjct: 483 N 483 >U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective spermatogenesis protein39, isoform a protein. Length = 522 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = +2 Query: 551 APAILSTTTACR-PAV---IHLDFGRLLTNYYSIYTHHDVLKANRYEPLHI 691 AP+++S +A P+ + LD+ RL + + H+VL+ R++PL I Sbjct: 120 APSVVSEASASSLPSEAQRLDLDYNRLRQEHRKLKDQHEVLRHERFQPLTI 170 >Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein F18C12.2b protein. Length = 2271 Score = 27.5 bits (58), Expect = 9.6 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +3 Query: 3 QTWLCTHVSLAIAGNAQCLPRVLNRPIILNN--NGNLRSI 116 Q+W + + + NA CL ++ NR +++ + N+RSI Sbjct: 123 QSWSDRRIPVTLRANASCLEQIDNRGVVVQSYPYKNIRSI 162 >Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein F18C12.2a protein. Length = 2279 Score = 27.5 bits (58), Expect = 9.6 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +3 Query: 3 QTWLCTHVSLAIAGNAQCLPRVLNRPIILNN--NGNLRSI 116 Q+W + + + NA CL ++ NR +++ + N+RSI Sbjct: 123 QSWSDRRIPVTLRANASCLEQIDNRGVVVQSYPYKNIRSI 162 >AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis protein RME-8 protein. Length = 2279 Score = 27.5 bits (58), Expect = 9.6 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +3 Query: 3 QTWLCTHVSLAIAGNAQCLPRVLNRPIILNN--NGNLRSI 116 Q+W + + + NA CL ++ NR +++ + N+RSI Sbjct: 123 QSWSDRRIPVTLRANASCLEQIDNRGVVVQSYPYKNIRSI 162 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,867,351 Number of Sequences: 27780 Number of extensions: 332319 Number of successful extensions: 949 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 949 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1592382278 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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