Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20956
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective sperm...    29   3.2  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    27   9.6  

>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +3

Query: 363 IQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDDTVDERANEHNDV 542
           +++   E   G+PT  PA        +     E    +    P T +DT D+R NE  ++
Sbjct: 423 VRYRPGEGTSGAPTLPPADDEADEQLAADEADEHPATDDAEEPPTVEDTEDQRQNELTEI 482

Query: 543 N 545
           N
Sbjct: 483 N 483


>U55363-6|AAA97964.1|  522|Caenorhabditis elegans Defective
           spermatogenesis protein39, isoform a protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +2

Query: 551 APAILSTTTACR-PAV---IHLDFGRLLTNYYSIYTHHDVLKANRYEPLHI 691
           AP+++S  +A   P+    + LD+ RL   +  +   H+VL+  R++PL I
Sbjct: 120 APSVVSEASASSLPSEAQRLDLDYNRLRQEHRKLKDQHEVLRHERFQPLTI 170


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 3   QTWLCTHVSLAIAGNAQCLPRVLNRPIILNN--NGNLRSI 116
           Q+W    + + +  NA CL ++ NR +++ +    N+RSI
Sbjct: 123 QSWSDRRIPVTLRANASCLEQIDNRGVVVQSYPYKNIRSI 162


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 3   QTWLCTHVSLAIAGNAQCLPRVLNRPIILNN--NGNLRSI 116
           Q+W    + + +  NA CL ++ NR +++ +    N+RSI
Sbjct: 123 QSWSDRRIPVTLRANASCLEQIDNRGVVVQSYPYKNIRSI 162


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 3   QTWLCTHVSLAIAGNAQCLPRVLNRPIILNN--NGNLRSI 116
           Q+W    + + +  NA CL ++ NR +++ +    N+RSI
Sbjct: 123 QSWSDRRIPVTLRANASCLEQIDNRGVVVQSYPYKNIRSI 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,867,351
Number of Sequences: 27780
Number of extensions: 332319
Number of successful extensions: 949
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)