Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20956
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18410.1 68414.m02299 kinesin motor protein-related similar t...    31   0.73 
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    30   1.7  
At1g73860.1 68414.m08552 kinesin motor protein-related similar t...    29   2.2  
At2g47980.1 68415.m06004 expressed protein                             28   5.1  
At2g37840.2 68415.m04646 protein kinase family protein contains ...    28   5.1  
At2g37840.1 68415.m04645 protein kinase family protein contains ...    28   5.1  
At1g60410.1 68414.m06801 F-box family protein contains F-box dom...    28   6.8  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    27   8.9  
At4g24200.1 68417.m03474 expressed protein hypothetical protein ...    27   8.9  

>At1g18410.1 68414.m02299 kinesin motor protein-related similar to
           kinesin-related protein GB:AAF24855 GI:6692749 from
           [Arabidopsis thaliana]
          Length = 1140

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 154 NRVPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFS 303
           N + NAP   +  I NG + +   +KNG   QRV+   R V   + R  S
Sbjct: 243 NNLDNAPTQSLLSIVNGILDETIERKNGELPQRVACLLRKVVQEIERRIS 292


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 160 VPNAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHR 270
           V +APK  I ++      DG+ K NG+A+Q +   +R
Sbjct: 488 VISAPKDLIGDVATSVSHDGTEKFNGLAKQAMEVVYR 524


>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
           kinesin-C GB:AAF04841 from [Strongylocentrotus
           purpuratus]
          Length = 1030

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 166 NAPKSCIAEIFNGDMTDGSPKKNGMARQRVSATHRHVRVTLTRDFS 303
           NAP   +  + NG + +   +KNG   QRV+   R V   + R  S
Sbjct: 120 NAPTQSLLSVLNGILDESIERKNGEIPQRVACLLRKVVQEIERRIS 165


>At2g47980.1 68415.m06004 expressed protein
          Length = 1098

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 383  NERRKSYALSRQDDERKRLFDTQS 454
            N RR+     R + ERKRLFD QS
Sbjct: 1030 NVRRRGRPRKRPETERKRLFDEQS 1053


>At2g37840.2 68415.m04646 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 596

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 297 LFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 452
           LF ++ S+    P+I  T  S  QFG  +    +P+ S   +  G A+  PS
Sbjct: 316 LFNRSISSTAPMPIIGATSNSIGQFGSLDSQYSAPSTSHGSLDLGDAFEQPS 367


>At2g37840.1 68415.m04645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 733

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 297 LFGQAASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPS 452
           LF ++ S+    P+I  T  S  QFG  +    +P+ S   +  G A+  PS
Sbjct: 453 LFNRSISSTAPMPIIGATSNSIGQFGSLDSQYSAPSTSHGSLDLGDAFEQPS 504


>At1g60410.1 68414.m06801 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 5   DLVVYARIPSHSRQRAVSTPSVESSYY 85
           +L++Y  +  H R ++VS PSV+  Y+
Sbjct: 142 NLILYCVVFDHPRSKSVSLPSVKKMYF 168


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 309 AASNGPVSPLITDTIRSNIQFGDSEMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH 479
           A S+ P +P  +    S +    S     +P+HSPA   + S    PS        H
Sbjct: 199 ATSHSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSH 255


>At4g24200.1 68417.m03474 expressed protein hypothetical protein -
           Arabidopsis thaliana,PIR2:T06677
          Length = 1000

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 381 EMNGGSPTHSPAKMMNGSAYSTPSRGEREPAEH*GNPITGDDTVDERANEHNDV 542
           E++ G P+HS ++ ++  +  + S+  R+   H G+P  G    +  + E   V
Sbjct: 491 EVDSGEPSHSSSEELSDESGQSGSQYSRDDDVHTGSPSKGLSVTENHSFEEPHV 544


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,667
Number of Sequences: 28952
Number of extensions: 308233
Number of successful extensions: 801
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)