Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20955
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.14 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.96 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 132  LPELSSDLVAALTSLDMYDFPHFVLFM*TINY--LTLKMLSARSTH 1
            L E + +L  AL+S++   F HFVL M  IN+  +T  ++ AR  H
Sbjct: 870  LVEFALELKKALSSINEQSFNHFVLKM-GINHGPVTAGVIGARKPH 914


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 402 VDSVLDVVRKEAESCDCLQG 461
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 362  VAGAGLSEDEVVRTEDLSERSRADR-VHGAGLQVDEDARGTYLPPE 228
            ++ AG  +++  R     +RS  +R VH  G Q D D +     P+
Sbjct: 1403 ISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRKTLTSAPQ 1448


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 193 QLERINVYYNEASGGKYVPRASSSTWSPA 279
           QL+R ++ +N    G+  PR+ +++ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,238
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)