Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20954
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 75 7e-15
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 2.4
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 27 3.2
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 26 4.3
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 26 5.6
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 5.6
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 7.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 7.5
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 9.9
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.9
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 9.9
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 75.4 bits (177), Expect = 7e-15
Identities = 48/142 (33%), Positives = 72/142 (50%)
Frame = +3
Query: 243 LCGRKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFK 422
+ G K R L R + IG P+F +A Q+++ IL ++ ++YNKF
Sbjct: 136 ILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFA 195
Query: 423 SVVSYAQSDLAPLH*EVY*ERQQADGIRLLDSDVLQSYTEFSLASLLFYALKEGACSEQS 602
S VS+ + E + D +V Q EF+ A+ +F A+ E CSE S
Sbjct: 196 SAVSFETVMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCSEMS 254
Query: 603 SRMTAMDNASKSAGEMIDKLTL 668
SR AM+NASKSAG+MI+K ++
Sbjct: 255 SRRNAMENASKSAGDMINKFSI 276
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +2
Query: 2 KMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCG 169
K V+ K TRA+R ++A+ Y + + ++ A PE+ K L VA +SD+GLCG
Sbjct: 55 KTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCG 109
Score = 28.3 bits (60), Expect = 1.1
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Frame = +1
Query: 172 VHTGVSKVIRNRLSEPGA-ENIKVICVGENLAVS-CRDCTESTSLVLLMRLDVSHLLSWT 345
+H+ +S++IR L +P EN + +GE + R C ES L S
Sbjct: 111 IHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEA 170
Query: 346 -QVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTWPLYTKKSIESASKLTAYD 507
Q+S + +D + +S++ + T LYT K+I + L+AY+
Sbjct: 171 LQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKN--LYTTKAINESPNLSAYE 223
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/128 (21%), Positives = 53/128 (41%)
Frame = +1
Query: 163 VRSVHTGVSKVIRNRLSEPGAENIKVICVGENLAVSCRDCTESTSLVLLMRLDVSHLLSW 342
+ S + VS ++ + S P + ++ + + S + +S+ + + L S
Sbjct: 569 IPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP 628
Query: 343 TQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTWPLYTKKSIESASKLTAYDFWTAT 522
T + L S +S++ S I SSS+ S + Y+ I S+S L +
Sbjct: 629 TPSTSSLMIS--SSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIV 686
Query: 523 YSNPTRSS 546
S+P SS
Sbjct: 687 SSSPVASS 694
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 228 EHQGDLCGRKSRGILQRLYGKHIIS 302
EH G L S GILQ++ G H+++
Sbjct: 106 EHLGSLTRTYSFGILQKIIGAHVLA 130
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 388 LVPERSF--ITSSSLWYRTPSPTWPLYTKKSIESASK 492
L P RSF +TS+ W + P ++ K++ ASK
Sbjct: 128 LKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASK 164
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 513 DSDVLQSYTEFSLASLLFYALKEGACSEQ 599
D D+ Q Y ++ASLL ++L + CS Q
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 264 REIFSHTDHLDVLSTRFAETVADHFRYTSVYTPHKPLSEVIA 139
+E+ SH D ++L +AE +Y HK S ++A
Sbjct: 236 QELASHMDRDEILLEGYAELPTYRMLMAKIYEEHKDPSTIMA 277
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 525 VRRCPEVVCRQLAGALNRLLSVEGPS 448
VR+ P + R +G NR++SVE P+
Sbjct: 645 VRQSPTSMIRTASGLTNRIVSVEKPA 670
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 343 TQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSP 447
TQ +PL FSP+ +S+ S + S + P P
Sbjct: 1403 TQTDFPLVFSPERSSIDINASSMRSEKASFEIPFP 1437
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 299 NDVLSVQSLQDTARFSPTQITLMFSAPGSLRRLR 198
N L++ + DTA F PT ++L + SL L+
Sbjct: 426 NSTLNLLASSDTAAFEPTAVSLHENPSSSLEDLQ 459
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 273 AGYREIFSHTDHLDVLSTRFAETVADHFRYTSVYTPH 163
+G+R IFS+ D++D +AETV + + S H
Sbjct: 652 SGFRIIFSNGDYIDF----YAETVGEKDEWMSTLRQH 684
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 602 VPHDRHGQRL-KERRRDD 652
VPH H RL K+RRRDD
Sbjct: 182 VPHGHHLTRLRKKRRRDD 199
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 299 NDVLSVQSLQDTARFSPTQITLMFS 225
NDV+ S+Q+T+ FSP + MFS
Sbjct: 252 NDVVRNFSVQNTSLFSPMSSSPMFS 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,670
Number of Sequences: 5004
Number of extensions: 55066
Number of successful extensions: 198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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