Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20954
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 73 3e-13
07_03_0571 - 19602755-19603831 34 0.089
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 33 0.21
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 31 0.63
04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781 29 2.5
05_04_0008 - 17098168-17099097 29 3.3
07_03_0912 + 22544144-22545589 29 4.4
07_03_0515 + 18992296-18993720 29 4.4
12_02_1285 - 27550548-27550709,27551473-27551516,27551588-275516... 28 5.9
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 28 5.9
03_05_0287 + 22759946-22760836 28 5.9
07_03_0518 + 19007793-19008722 28 7.7
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207... 28 7.7
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885... 28 7.7
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 72.5 bits (170), Expect = 3e-13
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
Frame = +3
Query: 324 LPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLAPLH*EVY*ERQQADGI 503
L F D + + E+ + ++++NKF SV+S+ + L EV + ++ +
Sbjct: 218 LQQKFTDVIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKV 277
Query: 504 RLLDS----------DVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKSAGEMI 653
LDS ++LQ+ TEF + +++ A E ACSE +RM+AMD++S++AGEM+
Sbjct: 278 GDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEML 337
Query: 654 DKLTL 668
D+LTL
Sbjct: 338 DRLTL 342
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 107 PPEDDPKQLFVAMTSDRGLCG 169
P D K + VA+TSD+GLCG
Sbjct: 112 PSVDVKKNVIVAITSDKGLCG 132
>07_03_0571 - 19602755-19603831
Length = 358
Score = 34.3 bits (75), Expect = 0.089
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Frame = +2
Query: 2 KMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPPED----------DPKQLFVAMT 148
K+V+AAK RA+ + ++RP+ E V+ Y + ED K V +T
Sbjct: 59 KLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTEDIDLPLTRIRPVKKVALVVLT 118
Query: 149 SDRGLCGVYTLVYLK*SAT 205
+RGLCG + LK + T
Sbjct: 119 GERGLCGSFNNNVLKKAET 137
>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 529 WSTSLSRSRMPSACWRSQ*TS*CRGAKSDWAYDTTDLN 416
WS+S S S + WR+ S C DW+ DTT LN
Sbjct: 660 WSSSESSSSLSRPDWRTNGPSPCDYTSIDWSLDTTLLN 697
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 337 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTWP 456
SW++ W +P S Q S+ P+ S I ++ LW R PS P
Sbjct: 306 SWSRAFWAIPASTQSISM-PQESTIPNNLLW-RKPSKDNP 343
>04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781
Length = 551
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 373 PQDTSLVPERSFITSS-SLWYRTPSPTWP 456
P T+L P+R ++ S+ S W P PTWP
Sbjct: 518 PTPTTLRPQRMWLASTVSGWDGLPRPTWP 546
>05_04_0008 - 17098168-17099097
Length = 309
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 364 PFSPQDTSLVPERSFITSSSLWYRTPSPTWPLYTKKSIESASKLTAYDF 510
P ++ L P R+ T SL Y S TW + + + S++ A DF
Sbjct: 59 PGEEEEAPLSPSRAKATVPSLEYEMSSVTWGVIQGRKEQLVSRVLALDF 107
>07_03_0912 + 22544144-22545589
Length = 481
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 421 SLWYRTPSPTWPLYTKKSIES 483
SLW+ P TWPLY ++ + +
Sbjct: 367 SLWFGVPMATWPLYGEQHLNA 387
>07_03_0515 + 18992296-18993720
Length = 474
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 412 TSSSLWYRTPSPTWPLYTKKSIESASKLTA 501
T SLW+ P WPLY ++ + + + + A
Sbjct: 369 TLESLWFGVPMVPWPLYAEQHLNAFTLVAA 398
>12_02_1285 -
27550548-27550709,27551473-27551516,27551588-27551651,
27551733-27552463,27552754-27552798,27553663-27554167
Length = 516
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +3
Query: 243 LCGRKSRGILQRLYGK---HIISVANEIGRLPPTFL-DASQLATAILTSGYEFGSGKI 404
LCG S ++Q L G I A+ +GR P A+ +A A+LT G+ G+I
Sbjct: 67 LCGPLSGLLVQPLVGHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRI 124
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 301 VLLMRLDVSHLLSWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPT--WPLYTKKS 474
V ++ LDVS++ + + +P SP S V R+ + S RTPSP P+ TK S
Sbjct: 511 VEMLSLDVSNVPQ-SAMDGRIP-SPSPQSPVSARTSSATPSPTARTPSPAPPSPIATKTS 568
Query: 475 IESASKLTAYDFWTATYSNPTRSS 546
L A + S+P R++
Sbjct: 569 TSVVLSLAAVRATSPATSSPPRAT 592
>03_05_0287 + 22759946-22760836
Length = 296
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 29 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGV 172
R+ DLK P+ G + ERA + ++DP +FV D G+ V
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGVFAV 270
>07_03_0518 + 19007793-19008722
Length = 309
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 412 TSSSLWYRTPSPTWPLYTKKSIES 483
T SLW+ P WPLY ++ + +
Sbjct: 202 TLESLWHGVPMAPWPLYAEQHLNA 225
>04_04_1631 -
34919197-34919205,34919865-34920204,34920418-34920726,
34920781-34921307,34921700-34921852,34922102-34922186,
34922360-34922364
Length = 475
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 505 DFWTATYSNPTRSSRWPRCCSTR*RRALAQS 597
D W+ +Y PT + WP C+ +R A+S
Sbjct: 161 DQWSDSYDIPTETLSWPEFCTIVCKRFAAKS 191
>01_06_0868 -
32587618-32587875,32588239-32588318,32588518-32588583,
32589896-32590523
Length = 343
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 358 PLPFSPQDTSLVPERSFITSSSLWYRTPSPTWP 456
P +P S P R+ + W R P PTWP
Sbjct: 78 PFSLTPSSASASPRRAQPWGRT-WARPPGPTWP 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,214
Number of Sequences: 37544
Number of extensions: 398413
Number of successful extensions: 1146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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