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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20954
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    73   3e-13
07_03_0571 - 19602755-19603831                                         34   0.089
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361     33   0.21 
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899     31   0.63 
04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781     29   2.5  
05_04_0008 - 17098168-17099097                                         29   3.3  
07_03_0912 + 22544144-22545589                                         29   4.4  
07_03_0515 + 18992296-18993720                                         29   4.4  
12_02_1285 - 27550548-27550709,27551473-27551516,27551588-275516...    28   5.9  
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058...    28   5.9  
03_05_0287 + 22759946-22760836                                         28   5.9  
07_03_0518 + 19007793-19008722                                         28   7.7  
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207...    28   7.7  
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885...    28   7.7  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
 Frame = +3

Query: 324 LPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLAPLH*EVY*ERQQADGI 503
           L   F D   +    +    E+ + ++++NKF SV+S+  +    L  EV  +  ++  +
Sbjct: 218 LQQKFTDVIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKV 277

Query: 504 RLLDS----------DVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKSAGEMI 653
             LDS          ++LQ+ TEF  + +++ A  E ACSE  +RM+AMD++S++AGEM+
Sbjct: 278 GDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEML 337

Query: 654 DKLTL 668
           D+LTL
Sbjct: 338 DRLTL 342



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 107 PPEDDPKQLFVAMTSDRGLCG 169
           P  D  K + VA+TSD+GLCG
Sbjct: 112 PSVDVKKNVIVAITSDKGLCG 132


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
 Frame = +2

Query: 2   KMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPPED----------DPKQLFVAMT 148
           K+V+AAK  RA+  + ++RP+ E  V+  Y   +    ED            K   V +T
Sbjct: 59  KLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTEDIDLPLTRIRPVKKVALVVLT 118

Query: 149 SDRGLCGVYTLVYLK*SAT 205
            +RGLCG +    LK + T
Sbjct: 119 GERGLCGSFNNNVLKKAET 137


>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
          Length = 760

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 529 WSTSLSRSRMPSACWRSQ*TS*CRGAKSDWAYDTTDLN 416
           WS+S S S +    WR+   S C     DW+ DTT LN
Sbjct: 660 WSSSESSSSLSRPDWRTNGPSPCDYTSIDWSLDTTLLN 697


>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
          Length = 712

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 337 SWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPTWP 456
           SW++  W +P S Q  S+ P+ S I ++ LW R PS   P
Sbjct: 306 SWSRAFWAIPASTQSISM-PQESTIPNNLLW-RKPSKDNP 343


>04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781
          Length = 551

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 373 PQDTSLVPERSFITSS-SLWYRTPSPTWP 456
           P  T+L P+R ++ S+ S W   P PTWP
Sbjct: 518 PTPTTLRPQRMWLASTVSGWDGLPRPTWP 546


>05_04_0008 - 17098168-17099097
          Length = 309

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 364 PFSPQDTSLVPERSFITSSSLWYRTPSPTWPLYTKKSIESASKLTAYDF 510
           P   ++  L P R+  T  SL Y   S TW +   +  +  S++ A DF
Sbjct: 59  PGEEEEAPLSPSRAKATVPSLEYEMSSVTWGVIQGRKEQLVSRVLALDF 107


>07_03_0912 + 22544144-22545589
          Length = 481

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 421 SLWYRTPSPTWPLYTKKSIES 483
           SLW+  P  TWPLY ++ + +
Sbjct: 367 SLWFGVPMATWPLYGEQHLNA 387


>07_03_0515 + 18992296-18993720
          Length = 474

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 412 TSSSLWYRTPSPTWPLYTKKSIESASKLTA 501
           T  SLW+  P   WPLY ++ + + + + A
Sbjct: 369 TLESLWFGVPMVPWPLYAEQHLNAFTLVAA 398


>12_02_1285 -
           27550548-27550709,27551473-27551516,27551588-27551651,
           27551733-27552463,27552754-27552798,27553663-27554167
          Length = 516

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +3

Query: 243 LCGRKSRGILQRLYGK---HIISVANEIGRLPPTFL-DASQLATAILTSGYEFGSGKI 404
           LCG  S  ++Q L G     I   A+ +GR  P     A+ +A A+LT G+    G+I
Sbjct: 67  LCGPLSGLLVQPLVGHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRI 124


>08_02_0417 -
           16904476-16904662,16904846-16905029,16905150-16905897,
           16906003-16906227,16906318-16906485,16906803-16907453
          Length = 720

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 301 VLLMRLDVSHLLSWTQVSWPLPFSPQDTSLVPERSFITSSSLWYRTPSPT--WPLYTKKS 474
           V ++ LDVS++   + +   +P SP   S V  R+   + S   RTPSP    P+ TK S
Sbjct: 511 VEMLSLDVSNVPQ-SAMDGRIP-SPSPQSPVSARTSSATPSPTARTPSPAPPSPIATKTS 568

Query: 475 IESASKLTAYDFWTATYSNPTRSS 546
                 L A    +   S+P R++
Sbjct: 569 TSVVLSLAAVRATSPATSSPPRAT 592


>03_05_0287 + 22759946-22760836
          Length = 296

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 29  RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGV 172
           R+  DLK   P+  G  +  ERA +   ++DP  +FV    D G+  V
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGVFAV 270


>07_03_0518 + 19007793-19008722
          Length = 309

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 412 TSSSLWYRTPSPTWPLYTKKSIES 483
           T  SLW+  P   WPLY ++ + +
Sbjct: 202 TLESLWHGVPMAPWPLYAEQHLNA 225


>04_04_1631 -
           34919197-34919205,34919865-34920204,34920418-34920726,
           34920781-34921307,34921700-34921852,34922102-34922186,
           34922360-34922364
          Length = 475

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 505 DFWTATYSNPTRSSRWPRCCSTR*RRALAQS 597
           D W+ +Y  PT +  WP  C+   +R  A+S
Sbjct: 161 DQWSDSYDIPTETLSWPEFCTIVCKRFAAKS 191


>01_06_0868 -
           32587618-32587875,32588239-32588318,32588518-32588583,
           32589896-32590523
          Length = 343

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 358 PLPFSPQDTSLVPERSFITSSSLWYRTPSPTWP 456
           P   +P   S  P R+     + W R P PTWP
Sbjct: 78  PFSLTPSSASASPRRAQPWGRT-WARPPGPTWP 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,214
Number of Sequences: 37544
Number of extensions: 398413
Number of successful extensions: 1146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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