Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20954
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 157 5e-39
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 115 3e-26
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 62 3e-10
U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical p... 30 1.7
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 30 1.7
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 29 3.9
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ... 28 5.2
U67950-1|AAP13771.1| 465|Caenorhabditis elegans Hypothetical pr... 28 6.9
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 28 6.9
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 6.9
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 9.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 9.1
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 157 bits (382), Expect = 5e-39
Identities = 82/140 (58%), Positives = 99/140 (70%)
Frame = +3
Query: 249 GRKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSV 428
G KSR LQRLY I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+V
Sbjct: 136 GDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTV 195
Query: 429 VSYAQSDLAPLH*EVY*ERQQADGIRLLDSDVLQSYTEFSLASLLFYALKEGACSEQSSR 608
VSY S L L E ++ +D DVLQSY+E+SLA L++Y +KE A SEQSSR
Sbjct: 196 VSYETSKLQILPLEAIKAKEALSTYDSVDDDVLQSYSEYSLAQLIYYGMKESATSEQSSR 255
Query: 609 MTAMDNASKSAGEMIDKLTL 668
MTAMD ASK+AGEMIDKLTL
Sbjct: 256 MTAMDGASKNAGEMIDKLTL 275
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Frame = +2
Query: 2 KMVSAAKYTRAERDLKAARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCG 169
KMV+AAKY +AER+LK AR YG GA F++ E ++ KQ+ V +TSDRGLCG
Sbjct: 49 KMVAAAKYAKAERELKGARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCG 108
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 115 bits (277), Expect = 3e-26
Identities = 60/116 (51%), Positives = 76/116 (65%)
Frame = +3
Query: 249 GRKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSV 428
G KSR LQRLY I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+V
Sbjct: 136 GDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTV 195
Query: 429 VSYAQSDLAPLH*EVY*ERQQADGIRLLDSDVLQSYTEFSLASLLFYALKEGACSE 596
VSY S L L E ++ +D DVLQSY+E+SLA L++Y +KE A SE
Sbjct: 196 VSYETSKLQILPLEAIKAKEALSTYDSVDDDVLQSYSEYSLAQLIYYGMKESATSE 251
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Frame = +2
Query: 2 KMVSAAKYTRAERDLKAARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCG 169
KMV+AAKY +AER+LK AR YG GA F++ E ++ KQ+ V +TSDRGLCG
Sbjct: 49 KMVAAAKYAKAERELKGARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCG 108
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Frame = +2
Query: 2 KMVSAAKYTRAERDLKAARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCG 169
KMV+AAKY +AER+LK AR YG GA F++ E ++ KQ+ V +TSDRGLCG
Sbjct: 49 KMVAAAKYAKAERELKGARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCG 108
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = +3
Query: 249 GRKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAIL 371
G KSR LQRLY I+ NEIGR PP+F DAS A AIL
Sbjct: 136 GDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAIL 176
>U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical
protein C23H3.9a protein.
Length = 503
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 358 PLPFSPQDTSLVPERSFITSSSL---WYRTPSPTWPLYTKKSIESASKLTA--YDFWTAT 522
PL +S + P + T++S WY WP Y + S E A + T+ + T+T
Sbjct: 148 PLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRISAEKALQKTSTTQETTTST 207
Query: 523 YSNPTRSS 546
+ PT ++
Sbjct: 208 TAQPTTTT 215
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 358 PLPFSPQDTSLVPERSFITSSSL---WYRTPSPTWPLYTKKSIESASKLTA--YDFWTAT 522
PL +S + P + T++S WY WP Y + S E A + T+ + T+T
Sbjct: 144 PLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRISAEKALQKTSTTQETTTST 203
Query: 523 YSNPTRSS 546
+ PT ++
Sbjct: 204 TAQPTTTT 211
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +1
Query: 358 PLPFSPQDTSLVPERSFITSSSL---WYRTPSPTWPLYTKKSIESASKLTA--YDFWTAT 522
PL +S + P + T++S WY WP Y + S E A + T+ + T+T
Sbjct: 87 PLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRISAEKALQKTSTTQETTTST 146
Query: 523 YSNPTRSS 546
+ PT ++
Sbjct: 147 TAQPTTTT 154
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 369 LTSGYEFGSGKIIYNKFKSVVSYAQSDLAPLH*EVY*ERQQ-ADGIRLLDSDVLQSYTEF 545
+ GYEFGS +I N+ + ++ + ++A H + + + + + + SD LQ YT
Sbjct: 482 IVGGYEFGSDEIDKNRMEINIAENRVNIARHHRPLTRQPSKFHEATQPIISDSLQKYTHL 541
Query: 546 SLASLLFYAL 575
L+F ++
Sbjct: 542 MTTPLVFVSV 551
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 369 LTSGYEFGSGKIIYNKFKSVVSYAQSDLAPLH*EVY*ERQQ-ADGIRLLDSDVLQSYTEF 545
+ GYEFGS +I N+ + ++ + ++A H + + + + + + SD LQ YT
Sbjct: 482 IVGGYEFGSDEIDKNRMEINIAENRVNIARHHRPLTRQPSKFHEATQPIISDSLQKYTHL 541
Query: 546 SLASLLFYAL 575
L+F ++
Sbjct: 542 MTTPLVFVSV 551
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -2
Query: 404 DLSGTKLVS*GENGSGQLTCVQESRWETSNLISNTNDVLSVQSLQDTARFSPTQITLMFS 225
++S K + +NG C +SRW T + + S + T + +PT T M S
Sbjct: 124 NISDAKWETLDDNGKNYFVCSYDSRWATK---PTPSTMKSTPTTPTTIKSTPTTPTTMKS 180
Query: 224 AP 219
P
Sbjct: 181 TP 182
>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
protein T05C3.2 protein.
Length = 1733
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +1
Query: 295 SLVLLMRLDVSHLLSWTQVSWPLPFSPQDTSLVPERSFITS 417
SL LL R+D +H L W S P PF SL P S I S
Sbjct: 560 SLDLLSRIDGAHELLWFPPSLP-PFVKLFASLTPGGSLIYS 599
>U67950-1|AAP13771.1| 465|Caenorhabditis elegans Hypothetical
protein T01B6.3a protein.
Length = 465
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -2
Query: 371 ENGSGQLTC--VQESRWETSNLISN 303
E GSG + C VQ S WE +N+IS+
Sbjct: 233 EIGSGNIICSGVQNSVWEAANIISH 257
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 327 PPTFLDASQLATAILTSGYEFGSGKI 404
PPTF D + A + GY FG KI
Sbjct: 3 PPTFADLGKSAKDLFNKGYNFGFLKI 28
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 430 YRTPSPTWPLYTKKSIE--SASKLTAYDFWTATYSNPTRSSRWPRCCSTR*RRALAQSSR 603
Y PS T Y + + + + + T T T + PT PR + R LA +SR
Sbjct: 252 YVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTT----PRLTTARATTPLATTSR 307
Query: 604 PA*PPWTTPQ 633
P P TTP+
Sbjct: 308 PTTPSPTTPR 317
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 367 FSPQDTSLVPERSFITSSSLWYRTPSPTWPLYTKKSIESASKLTAYDFWTATY--SNPTR 540
+SP + P T SS Y SPT P YT E Y + TY S+PT
Sbjct: 1778 YSPTSPTYSPTSPSYTPSSPQY---SPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1834
Query: 541 SSRWP 555
S P
Sbjct: 1835 SPASP 1839
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 367 FSPQDTSLVPERSFITSSSLWYRTPSPTWPLYTKKSIESASKLTAYDFWTATY--SNPTR 540
+SP + P T SS Y SPT P YT E Y + TY S+PT
Sbjct: 1785 YSPTSPTYSPTSPSYTPSSPQY---SPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1841
Query: 541 SSRWP 555
S P
Sbjct: 1842 SPASP 1846
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,178
Number of Sequences: 27780
Number of extensions: 318734
Number of successful extensions: 919
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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