Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20954
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 85 4e-17
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 32 0.40
At3g21760.1 68416.m02745 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.52
At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.2
At4g15280.1 68417.m02340 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.6
At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.6
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.6
At1g07260.1 68414.m00772 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.1
At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.8
At2g29730.1 68415.m03613 UDP-glucoronosyl/UDP-glucosyl transfera... 28 4.9
At2g29710.1 68415.m03611 UDP-glucoronosyl/UDP-glucosyl transfera... 28 4.9
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 28 6.5
At3g21780.1 68416.m02747 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.5
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 28 6.5
At5g62580.1 68418.m07855 expressed protein 27 8.5
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 85.0 bits (201), Expect = 4e-17
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Frame = +3
Query: 228 EHQGDLCGRKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKII 407
E Q + G K++ I+ R I+ E+ + P + S LA IL + EF + +I+
Sbjct: 141 EVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYAQVSVLADDILKN-VEFDALRIV 199
Query: 408 YNKFKSVVSYAQSDLAPLH*EVY*ERQQADG-IRLLDS----------DVLQSYTEFSLA 554
YNKF SVV++ + L E+ + + G + LDS ++LQ+ EF +
Sbjct: 200 YNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEILQNLAEFQFS 259
Query: 555 SLLFYALKEGACSEQSSRMTAMDNASKSAGEMIDKLTL 668
++F A+ E ACSE +RM+AMD++S++AGEM+D+LTL
Sbjct: 260 CVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTL 297
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Frame = +2
Query: 2 KMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD-----------PKQLFVAMT 148
K+V+AAK RA+ + RP+ E V+ DD K V +T
Sbjct: 74 KLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVDVPLTKVRPVKKVALVVVT 133
Query: 149 SDRGLCGVYTLVYLK 193
DRGLCG + +K
Sbjct: 134 GDRGLCGGFNNFIIK 148
>At3g21760.1 68416.m02745 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 485
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 412 TSSSLWYRTPSPTWPLYTKKSIES 483
T SLW+ P TWPLY ++ + +
Sbjct: 377 TLESLWFGVPMATWPLYAEQQVNA 400
>At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 421 SLWYRTPSPTWPLYTKKSIES 483
SLWY P TWP+Y ++ + +
Sbjct: 375 SLWYGVPIATWPMYAEQQLNA 395
>At4g15280.1 68417.m02340 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 478
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 421 SLWYRTPSPTWPLYTKKSIES 483
SLW+ P TWPLY ++ + +
Sbjct: 373 SLWFGVPMVTWPLYAEQKVNA 393
>At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 359
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 421 SLWYRTPSPTWPLYTKKSIES 483
SLW+ P TWPLY ++ + +
Sbjct: 253 SLWFGVPMVTWPLYAEQKVNA 273
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 412 TSSSLWYRTPSPTWPLYTKKSIES 483
T SLW+ P TWP+Y ++ + +
Sbjct: 373 TLESLWFGVPVATWPMYAEQQLNA 396
>At1g07260.1 68414.m00772 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 476
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 421 SLWYRTPSPTWPLYTKKSIESAS 489
SLW+ P TWP+Y ++ + + S
Sbjct: 375 SLWFGVPIATWPMYAEQQLNAFS 397
>At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 495
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 412 TSSSLWYRTPSPTWPLYTKKSIES 483
T SLW+ P+ WPLY ++ +
Sbjct: 374 TLESLWFGVPTAAWPLYAEQKFNA 397
>At2g29730.1 68415.m03613 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 467
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 421 SLWYRTPSPTWPLYTKKSIES 483
SLW+ P TWP+Y ++ + +
Sbjct: 365 SLWFGVPIVTWPMYAEQQLNA 385
>At2g29710.1 68415.m03611 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 467
Score = 28.3 bits (60), Expect = 4.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 421 SLWYRTPSPTWPLYTKKSIES 483
SLW+ P TWP+Y ++ + +
Sbjct: 365 SLWFGVPIVTWPMYAEQQLNA 385
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 332 YFLGRKSVGHCHSHLRIRV 388
YF+ K+ GHC++ L++RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170
>At3g21780.1 68416.m02747 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 431
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 412 TSSSLWYRTPSPTWPLYTKKSIES 483
T SLW+ P WPLY ++ +
Sbjct: 317 TLESLWFGVPMAIWPLYAEQKFNA 340
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +1
Query: 358 PLPFSPQDTSLVPERSFITSSSLWYRTPSPTWPLYTKKSIESASKLTAYDFWTATYSNPT 537
PL F+P D SF T+++ +R+P+ P + S SAS + A + T T T
Sbjct: 37 PLDFTPSD-------SFTTTTTTQHRSPTRFPPPSSSSSTPSAS-MHADNSPTPTIVTRT 88
Query: 538 RSSRWP 555
RS+R P
Sbjct: 89 RSNRSP 94
>At5g62580.1 68418.m07855 expressed protein
Length = 615
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 455 GQVGLGVRYHRLELVINDLSGTKLVS*G--ENGSGQLTC 345
G GL R H LEL ++++S VS G NGS + C
Sbjct: 486 GMRGLETRVHGLELALDEISYDLAVSNGRMSNGSSRNNC 524
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,095,464
Number of Sequences: 28952
Number of extensions: 303089
Number of successful extensions: 892
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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