Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20953
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   5.4  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   9.5  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   9.5  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   9.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   9.5  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 305 GGGTPSIWAYILQG*VSLRRPNE---YVTVEYKGTGRYQS 195
           G  T  +W   +QG + L  PNE   Y T+   G   Y S
Sbjct: 17  GKATAKVWNRNVQGFLDLNLPNECSQYTTIYSDGPSEYTS 56


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 254 MTPIPEGYTPKYWEYHRHPITRFIARY-IHNNPQQDYEKFM 373
           M P+ +   P Y+E   HP+      + + NN  +  E+F+
Sbjct: 369 MQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFI 409


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 320 FIARYIHNNPQQDYEKF-MHFLDEEQQRIKLRALEKEIIKK 439
           F+A   H  PQ++ E F M+  D++ ++ K +  +KE+ KK
Sbjct: 410 FVANLYH--PQREQETFKMYKNDDDTKKRKRKKKKKEVKKK 448


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 174 AYP*ICAIAIWMAAVPLFFLHDCLLRFS 91
           AYP IC ++I+++ +P+F      +R+S
Sbjct: 306 AYPSICDLSIFLSLLPIFNKVQDRMRYS 333


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 330 RAINLVIGWRWYSQYLGVYPSGIGVI 253
           +A+    GW ++ +Y  VYP+ +  +
Sbjct: 121 KALGFATGWNYFFKYAIVYPTNLTAV 146


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +2

Query: 65  NTECDFHHRENLKRQSWRKN 124
           N+ CD +++E L+++SW ++
Sbjct: 101 NSACDRYYQEALRKKSWSRS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,533
Number of Sequences: 5004
Number of extensions: 64793
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)