Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20953
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 36 0.021
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 32 0.34
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 32 0.34
08_01_0830 + 8055118-8056698 31 1.1
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 31 1.1
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 29 4.2
08_02_0467 - 17503754-17504037,17504183-17504354 28 5.6
02_05_1027 - 33602170-33602622,33602912-33603013 28 7.4
05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320 27 9.8
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119... 27 9.8
01_05_0042 - 17500897-17500953,17501560-17501765,17502055-175022... 27 9.8
>05_02_0034 +
5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 314 TRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKWLSARTTKPI 469
T+ + + N P DY +F H DE+ + +EK++I KW A +P+
Sbjct: 83 TQTCRKSLRNRPPIDYSRFEHISDEDSD---VEIVEKDVIAKWNPAGARRPV 131
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 30 NLVK---NSLKSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLH 179
N+VK +SLK NK + T KT+K S +TM + P K+ ++H
Sbjct: 327 NIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVH 379
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 66 IQNVTFTTAKTLKG-SHGERTMALQPSRWQWHKFKDMLHFYMMVGLI 203
++NV A+ L + GE +AL+ W+WH F+D+ H Y M G +
Sbjct: 526 LENVIKFPAEVLTPLTAGEIPVALK-QEWKWHLFEDVKHLYHMNGTL 571
>08_01_0830 + 8055118-8056698
Length = 526
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +2
Query: 182 LHDGWTDTGRC-----PYILL*RIHWAGAMTPIPEGY-TPKYWEYHRHPITRFIARYIHN 343
L+ W+ RC P++ L R H + T + Y T K+W+ + + + R I +
Sbjct: 426 LNASWSPLLRCLLIDKPFVALGRSHESKIETQLQTTYATQKFWKVPNPQLRQRLRRAIMS 485
Query: 344 NPQQDYEKFMHFLDEEQQ 397
DY K++ +D + +
Sbjct: 486 KVIPDYSKYIEQMDRQNK 503
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 12 GRSFGINLVKNSLKSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKF 164
GR I + + K+P +++ T T+ + + GSH R+++ P R ++H +
Sbjct: 129 GREISIVFAEENRKTPQEMRMRTRTSGRYMDGSHRRRSVSRSP-RSRYHSY 178
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 188 HVKVQHILKFVPLPSGWLQCHCSFSMTAF*GF 93
H K QH+L FV P G+L+C C + GF
Sbjct: 106 HPKHQHLLFFVK-PGGFLRCKCDICGKSVKGF 136
>08_02_0467 - 17503754-17504037,17504183-17504354
Length = 151
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 12 GRSFGINLVKNSLKSPNKIQNVTFTTAKTLKGSHGERTMA 131
GRSFG +V LK +VTF+ A + G GE+ +A
Sbjct: 76 GRSFGYEVVSGELKEVYDPYHVTFSFA-PVPGKEGEQCVA 114
>02_05_1027 - 33602170-33602622,33602912-33603013
Length = 184
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 251 RRPNEYVTVEYKGTGRYQSNHHVKVQH-ILKFVPL 150
++ N TVEY +Q++HH QH +LK++ L
Sbjct: 119 QKSNSPPTVEYYSRNPHQNSHHDHEQHGVLKYLDL 153
>05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320
Length = 627
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 160 LCHCHLDGCSAIVLSP*LPFKVFAVVKVTFCILLGDFKEFF-TKFMPKDRPR 8
LC LDGC A S + AVV V I++G FF + +P +P+
Sbjct: 225 LCGLPLDGCQASAKSKNNAAIIGAVVGVVVVIIIGVIIVFFCLRKLPAKKPK 276
>03_05_0264 -
22510997-22511012,22511641-22511709,22511783-22511931,
22512235-22512330,22512853-22512981,22513216-22513494,
22513983-22514069
Length = 274
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +3
Query: 51 KSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYC 230
++P + + AK + G++ L RW WH+F + ++++ ++ + + C
Sbjct: 105 RAPPSSVDSPYVRAKQAQDILGQK---LYKKRWDWHRFG--VKLFLLISILLSFCFLELC 159
Query: 231 NVFIGP 248
N+ + P
Sbjct: 160 NLNVFP 165
>01_05_0042 -
17500897-17500953,17501560-17501765,17502055-17502293,
17502386-17502442,17504214-17504672,17507866-17508377
Length = 509
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -3
Query: 474 IVIGLVVLALSHFLIISFSNARSFILCCSSSRKCINFS*SCCGLL*I*RAINLVIGWRWY 295
+++ + +LAL HF+ I+FSN I + ++ S L + ++ GW
Sbjct: 374 VLVSVTLLALRHFIGIAFSNEEEVINYVTRMVPVLSISVITDSLQGVLSGVSRGCGW--- 430
Query: 294 SQYLGVY 274
Q+LG Y
Sbjct: 431 -QHLGAY 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,163
Number of Sequences: 37544
Number of extensions: 413830
Number of successful extensions: 863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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