Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20953
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   2.5  
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)                      29   3.3  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   5.7  

>SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 269 EGYTPKYWEYHRHPITRFIAR---YIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKK 439
           E  +P  W  H++ +     R   YI    + DY+ F HF +  +   + R+L K+ +KK
Sbjct: 21  EDDSPIDWSEHKYTLDHLFFRDNDYIKRGTE-DYKDFWHFFERYESFQRKRSLSKKDVKK 79


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 261 LSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRNLCISLMKN 392
           L L D+R N+  T  ++S   L  ++       + NLC+SL+++
Sbjct: 496 LDLSDVRLNSIETATLRSAGQLAVLYVLAGGLGLNNLCVSLVRS 539


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 TPIPEGYTPKYWEYHRHPITRFIARYIHNNPQ 352
           TP+P  +TP+     R PI  +    +HN+P+
Sbjct: 282 TPLPAYFTPRVIHSPRTPIPAYFTPRVHNSPR 313


>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 782

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 362 EKFMHFLDEEQQRIKLRALEKEIIKKWLSART 457
           E+F  F+DEE + +K R + + +  K L+ RT
Sbjct: 587 EEFQEFVDEEGRVVKRRIVRRTVTTKTLTTRT 618


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 362  EKFMHFLDEEQQRIKLRALEKEIIKKWLSART 457
            E+F  F+DEE + +K R + + +  K L+ RT
Sbjct: 2594 EEFEEFVDEEGRVVKRRIVRRTVTTKTLTTRT 2625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,437,446
Number of Sequences: 59808
Number of extensions: 485721
Number of successful extensions: 1119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)