Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20953
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093071-1|AAH93071.1|  137|Homo sapiens NDUFB5 protein protein.       68   3e-11
BC009796-1|AAH09796.1|  189|Homo sapiens NADH dehydrogenase (ubi...    68   3e-11
BC005271-1|AAH05271.1|  189|Homo sapiens NADH dehydrogenase (ubi...    68   3e-11
AF047181-1|AAC04266.1|  189|Homo sapiens NADH-ubiquinone oxidore...    68   3e-11

>BC093071-1|AAH93071.1|  137|Homo sapiens NDUFB5 protein protein.
          Length = 137

 Score = 67.7 bits (158), Expect = 3e-11
 Identities = 27/61 (44%), Positives = 44/61 (72%)
 Frame = +2

Query: 254 MTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEII 433
           +  IPEGY P++WEY++HPI+R+IAR  +++P++ YE+ M  L  E ++ +LR  E E+ 
Sbjct: 46  LAEIPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVR 105

Query: 434 K 436
           K
Sbjct: 106 K 106


>BC009796-1|AAH09796.1|  189|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 beta subcomplex, 5, 16kDa protein.
          Length = 189

 Score = 67.7 bits (158), Expect = 3e-11
 Identities = 27/61 (44%), Positives = 44/61 (72%)
 Frame = +2

Query: 254 MTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEII 433
           +  IPEGY P++WEY++HPI+R+IAR  +++P++ YE+ M  L  E ++ +LR  E E+ 
Sbjct: 98  LAEIPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVR 157

Query: 434 K 436
           K
Sbjct: 158 K 158



 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +3

Query: 105 GSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYCNVFIGPAQ 254
           G HG+R   ++PSR+   +F  +L FY+ +  IP    I   NVFIG A+
Sbjct: 48  GDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAE 97


>BC005271-1|AAH05271.1|  189|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 beta subcomplex, 5, 16kDa protein.
          Length = 189

 Score = 67.7 bits (158), Expect = 3e-11
 Identities = 27/61 (44%), Positives = 44/61 (72%)
 Frame = +2

Query: 254 MTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEII 433
           +  IPEGY P++WEY++HPI+R+IAR  +++P++ YE+ M  L  E ++ +LR  E E+ 
Sbjct: 98  LAEIPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVR 157

Query: 434 K 436
           K
Sbjct: 158 K 158



 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +3

Query: 105 GSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYCNVFIGPAQ 254
           G HG+R   ++PSR+   +F  +L FY+ +  IP    I   NVFIG A+
Sbjct: 48  GDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAE 97


>AF047181-1|AAC04266.1|  189|Homo sapiens NADH-ubiquinone
           oxidoreductase subunit CI-SGDH protein.
          Length = 189

 Score = 67.7 bits (158), Expect = 3e-11
 Identities = 27/61 (44%), Positives = 44/61 (72%)
 Frame = +2

Query: 254 MTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEII 433
           +  IPEGY P++WEY++HPI+R+IAR  +++P++ YE+ M  L  E ++ +LR  E E+ 
Sbjct: 98  LAEIPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVR 157

Query: 434 K 436
           K
Sbjct: 158 K 158



 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +3

Query: 105 GSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYCNVFIGPAQ 254
           G HG+R   ++PSR+   +F  +L FY+ +  IP    I   NVFIG A+
Sbjct: 48  GDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAE 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,430,193
Number of Sequences: 237096
Number of extensions: 2401539
Number of successful extensions: 6588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6588
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)