Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20953
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical ...    31   0.71 
Z81063-2|CAB02959.1|  823|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024882-3|AAF60934.1|  340|Caenorhabditis elegans Seven tm rece...    30   1.2  
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AL132859-2|CAB60488.1|  315|Caenorhabditis elegans Hypothetical
           protein Y39C12A.3 protein.
          Length = 315

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 36  VKNSLKSPNKIQNVTFTTAKTLKGSHGE 119
           VK  L+ PNKIQ+V +++ K LKG+ GE
Sbjct: 282 VKIGLRKPNKIQSVRYSSRK-LKGTFGE 308


>Z81063-2|CAB02959.1|  823|Caenorhabditis elegans Hypothetical
           protein F15D3.4 protein.
          Length = 823

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 233 RIHWAGAMTPIPEGYTPKYWEYHRHPITRFIARYIHNNPQQDYEKF 370
           R+   GAM  I  GY P   +Y+   I++ + + I N+   D++KF
Sbjct: 164 RLRAVGAMMAIALGYNPAAMDYNLKGISKLVKK-ILNSESPDFKKF 208


>AC024882-3|AAF60934.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 155 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 261 LSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRNL 371
           L+ KDI  N G TT++  P LL+  F T   R ++NL
Sbjct: 197 LTAKDIMANLGLTTSMVIPILLIVFFGTKTYRKVKNL 233


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 66  IQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAG---ALIFYCNV 236
           +QN      K +K  +G+R   L     + H  +D  + Y++V L+P G    L   CN 
Sbjct: 744 LQNTDGANYKCIKIENGDRMPQLVARALEKHLIEDDKNTYLLVQLLPRGGEFVLPDNCNP 803

Query: 237 FIGPA 251
           F   A
Sbjct: 804 FYAMA 808


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,818
Number of Sequences: 27780
Number of extensions: 367706
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)