BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20952 (647 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment h... 26 0.31 AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like prote... 22 3.8 AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 22 3.8 AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 22 3.8 AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 21 6.6 AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein p... 21 6.6 AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein p... 21 6.6 >AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment homeodomain protein protein. Length = 232 Score = 25.8 bits (54), Expect = 0.31 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 222 PVQWESVCRTSRGEHRGEPSSLSPTPIQL*RCALREH 332 P W S+ R+S P + +PT + RCALR+H Sbjct: 82 PFAWGSLXRSS------SPQTSAPTGPPIVRCALRKH 112 >AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like protein protein. Length = 314 Score = 22.2 bits (45), Expect = 3.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +3 Query: 264 HRGEPSSLSPTPIQ 305 H GEP+ L+P IQ Sbjct: 217 HTGEPTDLTPEQIQ 230 >AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain transcription factor Prothoraxlessprotein. Length = 323 Score = 22.2 bits (45), Expect = 3.8 Identities = 11/40 (27%), Positives = 14/40 (35%) Frame = +3 Query: 417 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPRCAQYKKDG 536 HH H +Q + G MH G +P Q G Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQG 217 >AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless protein. Length = 325 Score = 22.2 bits (45), Expect = 3.8 Identities = 11/40 (27%), Positives = 14/40 (35%) Frame = +3 Query: 417 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPRCAQYKKDG 536 HH H +Q + G MH G +P Q G Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQG 219 >AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain transcription factor Labialprotein. Length = 353 Score = 21.4 bits (43), Expect = 6.6 Identities = 6/18 (33%), Positives = 10/18 (55%) Frame = -1 Query: 248 PANAFPLYRWIRQRRGYP 195 P P Y+W++ +R P Sbjct: 190 PQPVLPTYKWMQVKRNVP 207 >AF230313-1|AAF64147.1| 210|Tribolium castaneum labial protein protein. Length = 210 Score = 21.4 bits (43), Expect = 6.6 Identities = 6/18 (33%), Positives = 10/18 (55%) Frame = -1 Query: 248 PANAFPLYRWIRQRRGYP 195 P P Y+W++ +R P Sbjct: 190 PQPVLPTYKWMQVKRNVP 207 >AF230312-1|AAF64146.1| 253|Tribolium castaneum labial protein protein. Length = 253 Score = 21.4 bits (43), Expect = 6.6 Identities = 6/18 (33%), Positives = 10/18 (55%) Frame = -1 Query: 248 PANAFPLYRWIRQRRGYP 195 P P Y+W++ +R P Sbjct: 190 PQPVLPTYKWMQVKRNVP 207 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 153,544 Number of Sequences: 336 Number of extensions: 3563 Number of successful extensions: 7 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7 length of database: 122,585 effective HSP length: 55 effective length of database: 104,105 effective search space used: 16656800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -