Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20952
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    26   0.31 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   3.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   3.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   3.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   6.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.6  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 222 PVQWESVCRTSRGEHRGEPSSLSPTPIQL*RCALREH 332
           P  W S+ R+S       P + +PT   + RCALR+H
Sbjct: 82  PFAWGSLXRSS------SPQTSAPTGPPIVRCALRKH 112


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 264 HRGEPSSLSPTPIQ 305
           H GEP+ L+P  IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +3

Query: 417 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPRCAQYKKDG 536
           HH  H  +Q      + G  MH  G    +P   Q    G
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQG 217


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +3

Query: 417 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPRCAQYKKDG 536
           HH  H  +Q      + G  MH  G    +P   Q    G
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQG 219


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 248 PANAFPLYRWIRQRRGYP 195
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 248 PANAFPLYRWIRQRRGYP 195
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 248 PANAFPLYRWIRQRRGYP 195
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,544
Number of Sequences: 336
Number of extensions: 3563
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)