Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20952
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    28   1.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   9.4  

>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 607 SWIAWYEGVLRPIFSTQRHLAKWQPSFLYWAQRGRGRPDPGWCIRLPI 464
           +W   Y+G +R    TQ    +    ++YW  +  G P P W + L I
Sbjct: 342 TWTDEYKGAVRLFIETQLDQFERGAGWIYWTAK-TGGPSPTWDMGLLI 388


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 545  RQVALRAEDRPQHPLVPSYPGKRQCSRPLRF 637
            R++++R+     HP V  YP  R   R  RF
Sbjct: 3347 RRLSIRSNGGTIHPFVIQYPSARNSRREERF 3377


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 134 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGK 238
           P PE ++E  K+A++   P K   +A ES     K
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSK 511


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 403 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDL 504
           L+K+G++P   V++       +ED+ +T+G++ L
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQL 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,987
Number of Sequences: 5004
Number of extensions: 54444
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)