Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20952
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 125 3e-29
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 125 3e-29
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_45940| Best HMM Match : Vicilin_N (HMM E-Value=5.1) 28 5.7
SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33) 28 7.5
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 28 7.5
SB_18905| Best HMM Match : Nop (HMM E-Value=0) 28 7.5
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 27 9.9
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 125 bits (302), Expect = 3e-29
Identities = 65/92 (70%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +1
Query: 232 GKAFAGHRVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEK 411
GK A VENTEENRR YRQLLF+S +S ISGVILFHET+YQKADDGTP V LL
Sbjct: 38 GKRLANIGVENTEENRRLYRQLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRD 97
Query: 412 KGIIPGIKVDKGVVPLFGSE-DECTTQGLDDL 504
+GIIPGIKVDKGVV L G++ E TTQGLD L
Sbjct: 98 QGIIPGIKVDKGVVVLAGTDAGETTTQGLDGL 129
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = +3
Query: 510 RCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASIC 644
RCAQYKKDGC FAKWRCVLKI TPS A++ENANVLARYASIC
Sbjct: 132 RCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASIC 176
Score = 64.1 bits (149), Expect = 9e-11
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +2
Query: 137 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 253
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +I
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANI 44
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 125 bits (302), Expect = 3e-29
Identities = 65/92 (70%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +1
Query: 232 GKAFAGHRVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEK 411
GK A VENTEENRR YRQLLF+S +S ISGVILFHET+YQKADDGTP V LL
Sbjct: 38 GKRLANIGVENTEENRRLYRQLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRD 97
Query: 412 KGIIPGIKVDKGVVPLFGSE-DECTTQGLDDL 504
+GIIPGIKVDKGVV L G++ E TTQGLD L
Sbjct: 98 QGIIPGIKVDKGVVVLAGTDAGETTTQGLDGL 129
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = +3
Query: 510 RCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASIC 644
RCAQYKKDGC FAKWRCVLKI TPS A++ENANVLARYASIC
Sbjct: 132 RCAQYKKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASIC 176
Score = 64.1 bits (149), Expect = 9e-11
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +2
Query: 137 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 253
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +I
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANI 44
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 331 ISGVILFHETLYQKADDGTPLVSLLEKK 414
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_45940| Best HMM Match : Vicilin_N (HMM E-Value=5.1)
Length = 454
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -2
Query: 523 YW-AQRGRGRPDPGWCIR 473
YW AQ+G+GRP+P W ++
Sbjct: 365 YWRAQQGKGRPNPYWRVQ 382
>SB_36428| Best HMM Match : MutS_V (HMM E-Value=2.1e-33)
Length = 689
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 381 IVSLLVKGLVEQDHTRDVLGEHSVRAE*ELAITTTVLLC 265
+V+LLV G ++ V+G+ SV + + I TTVL C
Sbjct: 425 LVALLVFGQCDRQDETGVVGDISVVVDTRVIIDTTVLKC 463
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 458 CSDRKTNAPPRVWTTSPALRPVQEG-RLPLRQVALRAEDRPQHPLVPS 598
C R+ P V TTSPALR G RL + +PQ L+P+
Sbjct: 526 CQVRQLFEPSNVTTTSPALRKPNGGSRLVTAFADVGRYSKPQPSLMPN 573
>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
Length = 194
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +2
Query: 122 YFQYPTPELQEELKKIAQAIVAPAKGILAA-----DEST-GTMGKRLQD 250
YF + ++++K A IVA AK LAA EST GT+GKRLQ+
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVA-AKCTLAARVDSFHESTEGTIGKRLQE 158
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 396 LPAGEEGHHPRHQGRQGCRPAVRIGRR--MHHPGSGRPRPRCAQYKKD 533
L E+ P GRQG R V+ GR ++ SG+P+P YK D
Sbjct: 1206 LEVEEKNVAPSFHGRQG-RLRVKEGREASVYFEISGKPKPSVTWYKDD 1252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,350,045
Number of Sequences: 59808
Number of extensions: 474083
Number of successful extensions: 1318
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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