Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20952
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 125 2e-29
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 125 2e-29
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 97 1e-20
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 97 1e-20
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 97 1e-20
AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical ... 28 5.0
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 6.6
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 6.6
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 8.7
AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormo... 27 8.7
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 125 bits (302), Expect = 2e-29
Identities = 58/83 (69%), Positives = 71/83 (85%)
Frame = +1
Query: 256 VENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIK 435
+ENTEENRR+YRQLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIK
Sbjct: 49 LENTEENRRKYRQLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIK 108
Query: 436 VDKGVVPLFGSEDECTTQGLDDL 504
VDKGVVP+ G+ E TTQGLDDL
Sbjct: 109 VDKGVVPMAGTIGEGTTQGLDDL 131
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/45 (71%), Positives = 35/45 (77%)
Frame = +3
Query: 510 RCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASIC 644
RCAQYKKDG FAKWRCV KI TPS A++E A+ LARYASIC
Sbjct: 134 RCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLARYASIC 178
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +2
Query: 113 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 253
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL I
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSI 47
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 125 bits (302), Expect = 2e-29
Identities = 58/83 (69%), Positives = 71/83 (85%)
Frame = +1
Query: 256 VENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIK 435
+ENTEENRR+YRQLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIK
Sbjct: 49 LENTEENRRKYRQLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIK 108
Query: 436 VDKGVVPLFGSEDECTTQGLDDL 504
VDKGVVP+ G+ E TTQGLDDL
Sbjct: 109 VDKGVVPMAGTIGEGTTQGLDDL 131
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/46 (67%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +3
Query: 510 RCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENA-NVLARYASIC 644
RCAQYKKDG FAKWRCV KI TPS A++E A N+ +RYASIC
Sbjct: 134 RCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLGSRYASIC 179
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +2
Query: 113 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 253
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL I
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSI 47
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/91 (53%), Positives = 63/91 (69%)
Frame = +1
Query: 232 GKAFAGHRVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEK 411
GK +EN E NR++YRQLLF++ L+++ISGVIL+ ET +Q D G LL K
Sbjct: 45 GKRLDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLLIK 103
Query: 412 KGIIPGIKVDKGVVPLFGSEDECTTQGLDDL 504
+GI+PGIK+D GVVPL G+ E TTQGLD L
Sbjct: 104 QGIVPGIKLDLGVVPLAGTIGEGTTQGLDKL 134
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 510 RCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASIC 644
R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASIC
Sbjct: 137 RAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASIC 181
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2
Query: 137 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 253
T ++EL +IA IV KGILAADESTGT+GKRL I
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAI 51
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/91 (53%), Positives = 63/91 (69%)
Frame = +1
Query: 232 GKAFAGHRVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEK 411
GK +EN E NR++YRQLLF++ L+++ISGVIL+ ET +Q D G LL K
Sbjct: 45 GKRLDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLLIK 103
Query: 412 KGIIPGIKVDKGVVPLFGSEDECTTQGLDDL 504
+GI+PGIK+D GVVPL G+ E TTQGLD L
Sbjct: 104 QGIVPGIKLDLGVVPLAGTIGEGTTQGLDKL 134
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 510 RCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASIC 644
R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASIC
Sbjct: 137 RAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASIC 181
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2
Query: 137 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 253
T ++EL +IA IV KGILAADESTGT+GKRL I
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAI 51
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/91 (53%), Positives = 63/91 (69%)
Frame = +1
Query: 232 GKAFAGHRVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEK 411
GK +EN E NR++YRQLLF++ L+++ISGVIL+ ET +Q D G LL K
Sbjct: 45 GKRLDAINLENNETNRQKYRQLLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLLIK 103
Query: 412 KGIIPGIKVDKGVVPLFGSEDECTTQGLDDL 504
+GI+PGIK+D GVVPL G+ E TTQGLD L
Sbjct: 104 QGIVPGIKLDLGVVPLAGTIGEGTTQGLDKL 134
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 510 RCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASIC 644
R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASIC
Sbjct: 137 RAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASIC 181
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +2
Query: 137 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDI 253
T ++EL +IA IV KGILAADESTGT+GKRL I
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAI 51
>AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical
protein Y41D4A.8 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 379 DGTPLVSLLEKKGII--PGIKVDKGVVPLFGSEDECT 483
D +PLVS+L G+I P + + VPLF ED CT
Sbjct: 10 DPSPLVSVL---GLIKSPDLMIGSTEVPLFEEEDMCT 43
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 259 ENTEENRRRYRQLLFSSDA 315
E TEEN +RY QL+ SD+
Sbjct: 798 EQTEENEKRYEQLVSESDS 816
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 259 ENTEENRRRYRQLLFSSDA 315
E TEEN +RY QL+ SD+
Sbjct: 784 EQTEENEKRYEQLVSESDS 802
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 259 ENTEENRRRYRQLLFSSDA 315
E TEEN +RY QL+ SD+
Sbjct: 784 EQTEENEKRYEQLVSESDS 802
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = +3
Query: 405 GEEGHH--PRHQGRQGCRPAVRIGRRMHHPGSGRPRP 509
G GHH P H G P+ R G HH RP P
Sbjct: 392 GRHGHHGPPHHHHHDGRSPS-RHGHHHHHHHGCRPFP 427
>AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 72 protein.
Length = 324
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 127 SIPNS*AAGGAQEDRSSNCSSRKGYPRR*RIHRYNGKAFAGHRVENTEENRRR 285
SIP+S ++ + RS++ + G+ + +IH + F VE T +RR
Sbjct: 83 SIPSSGSSNSSSTSRSNSPQTYSGFSKILKIHHEDLLQFYLEEVEKTMSQKRR 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,246
Number of Sequences: 27780
Number of extensions: 339740
Number of successful extensions: 1038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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