Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20952
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +3

Query: 393  GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRP 509
            G   G+ G    H G +G      +G   + P SG P P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEP 1859


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 474 RMHHPGSGRPRPRCAQYKKDGCHFAKWR 557
           + HHP   RPR        D  H+ +++
Sbjct: 153 KRHHPRYKRPRTTFEPRATDSRHYDRYK 180


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 357 DPLPEG*RWNASGLPAGEEG 416
           DP P   +  AS + AGEEG
Sbjct: 589 DPXPNTCKVIASSVSAGEEG 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,719
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)