Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20951
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   101   4e-23
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   101   4e-23
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   0.53 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   0.92 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.2  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.2  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   3.7  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   6.5  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    24   8.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    24   8.6  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  101 bits (243), Expect = 4e-23
 Identities = 47/65 (72%), Positives = 55/65 (84%)
 Frame = +3

Query: 60  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 240 ERERR 254
           ERER+
Sbjct: 77  ERERK 81



 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +2

Query: 260 YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 385
           YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 84  YVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  101 bits (243), Expect = 4e-23
 Identities = 47/65 (72%), Positives = 55/65 (84%)
 Frame = +3

Query: 60  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS KLQEE
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76

Query: 240 ERERR 254
           ERER+
Sbjct: 77  ERERK 81



 Score = 44.8 bits (101), Expect = 6e-06
 Identities = 21/31 (67%), Positives = 24/31 (77%)
 Frame = +2

Query: 260 YVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 352
           YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 84  YVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 96  DTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRTTMSQKC 275
           D  K + ++I II  K L++ +A  +TH +  L+H+Q    S++   E   ++ T     
Sbjct: 145 DKEKEVEKKITII--KDLKDALAS-STHQVLELQHTQQEKASLQTNYEFELQKLTQKNSI 201

Query: 276 LLSNMT 293
           L +N T
Sbjct: 202 LENNNT 207


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 186 RRLRHSQVRGISIKLQEEERERRTTMSQKCLLSNMTS 296
           R+   S+ R  S KL EEER+RRT    + L + +TS
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQ-LANRLTS 253


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 201 SQVRGISIKLQEEERERRTTMSQKCLLSNM 290
           S V  ISIK QEEER+R+  + ++   S +
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRL 380


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 148 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 38
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 166 PAILFLRGLVGMIAISSHILLFVSK 92
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 120 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 212
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 185 EASQTLASARNLYQTSGRGA*EAYNYVPEVSALEHDIIEVDP 310
           + S T+     LYQ++G      YN   E +   H ++   P
Sbjct: 316 QKSITMVGVEPLYQSNGNEKSSKYNVFSESAHGNHQVLSFSP 357


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 248 EAYNYVPEVSALEHDI 295
           E YNY+P+ + L H I
Sbjct: 408 ENYNYIPDSNGLNHSI 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,530
Number of Sequences: 5004
Number of extensions: 29560
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)