Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20951
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            106   6e-24
10_07_0174 + 13815478-13815903                                        106   9e-24
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374...    28   2.7  
07_03_1519 + 27390204-27390590,27390591-27390809,27392516-273929...    27   6.3  
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421...    27   8.3  
03_06_0659 - 35345095-35345135,35345982-35347365                       27   8.3  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  106 bits (255), Expect = 6e-24
 Identities = 46/65 (70%), Positives = 59/65 (90%)
 Frame = +3

Query: 60  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76

Query: 240 ERERR 254
           ERERR
Sbjct: 77  ERERR 81



 Score = 33.1 bits (72), Expect = 0.096
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +2

Query: 257 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 376
           ++VP+ SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 83  DFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  106 bits (254), Expect = 9e-24
 Identities = 46/65 (70%), Positives = 58/65 (89%)
 Frame = +3

Query: 60  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76

Query: 240 ERERR 254
           ERERR
Sbjct: 77  ERERR 81



 Score = 33.1 bits (72), Expect = 0.096
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 257 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQ 373
           ++VPE SALE + I VD +T +ML  L   ++ G++  Q
Sbjct: 83  DFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQ 121


>05_05_0301 +
           23936126-23936267,23937101-23937174,23937338-23937421,
           23937502-23937582,23938304-23938384,23938503-23938595,
           23939094-23939270,23939838-23939927,23940859-23940925,
           23941218-23941309
          Length = 326

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 173 HTFNEASQTLASARNLYQTSGRGA*EAYNYVPEVSALEH 289
           H F + S+    A NL+   G+G  E+   VPE+SALEH
Sbjct: 206 HGFLDVSKV---AGNLHFAPGKGFYESNINVPELSALEH 241


>07_03_1519 +
           27390204-27390590,27390591-27390809,27392516-27392962,
           27393076-27393274,27393372-27393456,27393566-27393998
          Length = 589

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 138 TKPLRNKIAGFATHLMRRLRHS---QVRGISIKLQEEERERRTTMSQKCLLSNMTSS 299
           T+ L +KIA F     + + +S   QVR + +++ +E RE++         +++ SS
Sbjct: 104 TESLSDKIASFKEQFNKDIENSLPRQVRSVLLQINDEHREKQPMSHDNVNSASLPSS 160


>06_01_0587 -
           4211917-4212021,4212250-4212478,4213426-4213759,
           4215116-4215186,4215374-4215493,4216353-4216771,
           4216885-4217336,4217434-4217812
          Length = 702

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 311 DTKDMLKMLDFNNINGLQLTQPATQ 385
           DTKDMLK +D+  + G  +T   +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621


>03_06_0659 - 35345095-35345135,35345982-35347365
          Length = 474

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 358 PATNTASYPGWLW 396
           PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,905
Number of Sequences: 37544
Number of extensions: 178284
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)