Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20951
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   108   2e-24
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   2.4  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   2.4  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    28   3.2  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    26   9.8  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  108 bits (259), Expect = 2e-24
 Identities = 49/65 (75%), Positives = 56/65 (86%)
 Frame = +3

Query: 60  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 240 ERERR 254
           ERERR
Sbjct: 77  ERERR 81


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 138 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 254
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 138 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 254
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 164 WICHTFNEASQTLASARNLYQTSGRGA 244
           W CH FN A   ++ A+ L Q     A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 314 TKDMLKMLDFNNINGLQL 367
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 321 SLVSGSTSMMSCSRADTSGT*LYASHAPLPEV 226
           S  SGST  +  + A TSG+ L  + AP P V
Sbjct: 614 STSSGSTVTVGSTEASTSGSSLATTSAPKPSV 645


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 321 SLVSGSTSMMSCSRADTSGT*LYASHAPLPEV 226
           S  SGST  +  + A TSG+ L  + AP P V
Sbjct: 821 STSSGSTVTVGSTEASTSGSSLATTSAPKPSV 852


>U40955-6|AAA81754.1|  539|Caenorhabditis elegans Hypothetical
           protein F48B9.1 protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 257 CTPLTLLFLKFDRDSSHLRVSETPH*MCGKSSNFIPKRLGRNDS 126
           CTP+  +F+K  R +  +RV ET      K   F+P     ND+
Sbjct: 336 CTPVEKMFVKNSRSAPEMRVHET------KIQPFLPSPSPSNDA 373


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 93  FDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRTTMSQK 272
           F  NK+ CE +A++  K L         H+ +  R      +   L + + ER   + ++
Sbjct: 409 FCPNKKNCENVAVLIAKTL-------PAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQ 461

Query: 273 CLLSNM 290
           C+LS +
Sbjct: 462 CILSGV 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,765,747
Number of Sequences: 27780
Number of extensions: 159475
Number of successful extensions: 417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)