Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20951
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 107 2e-24
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 107 2e-24
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 107 2e-24
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 107 2e-24
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 107 2e-24
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 1.7
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 1.7
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 28 2.3
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 28 2.3
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 7.0
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 26 9.3
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 26 9.3
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 107 bits (258), Expect = 2e-24
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +3
Query: 60 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 240 ERERR 254
ERERR
Sbjct: 77 ERERR 81
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 107 bits (258), Expect = 2e-24
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +3
Query: 60 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 240 ERERR 254
ERERR
Sbjct: 77 ERERR 81
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 107 bits (258), Expect = 2e-24
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +3
Query: 60 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 240 ERERR 254
ERERR
Sbjct: 77 ERERR 81
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 107 bits (258), Expect = 2e-24
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +3
Query: 60 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 240 ERERR 254
ERERR
Sbjct: 77 ERERR 81
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 107 bits (258), Expect = 2e-24
Identities = 49/65 (75%), Positives = 59/65 (90%)
Frame = +3
Query: 60 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 239
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 240 ERERR 254
ERERR
Sbjct: 77 ERERR 81
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 375 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 268
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 375 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 268
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 254
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERR 254
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++ R
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLR 737
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 73 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 165
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 254 YNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 361
Y ++ V HDI VDPD LK L N+++ +
Sbjct: 3411 YKHILGVKVTYHDIEAVDPDYYKNLKWLLENDVSDI 3446
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 254 YNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 361
Y ++ V HDI VDPD LK L N+++ +
Sbjct: 3644 YKHILGVKVTYHDIEAVDPDYYKNLKWLLENDVSDI 3679
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,268,066
Number of Sequences: 28952
Number of extensions: 147266
Number of successful extensions: 423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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