Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20950
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 165 4e-42
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 165 5e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 165 5e-42
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 95 1e-20
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 87 2e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 67 3e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 48 1e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.010
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.068
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.16
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 31 0.21
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.36
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.48
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.9
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 3.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.9
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 165 bits (402), Expect = 4e-42
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +3
Query: 3 TIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRD 182
TIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRD
Sbjct: 38 TIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRD 97
Query: 183 FIKNMITGTSQADCAVLIVAAGTG 254
FIKNMITGTSQADCAVLI+ GTG
Sbjct: 98 FIKNMITGTSQADCAVLIIGGGTG 121
Score = 131 bits (316), Expect = 1e-31
Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 257 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 436
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVG 180
Query: 437 YNPAAVAFVPISGWHGDNMLEPSTKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPA-P 613
+NP V FVP+SG+ GDNM+EP+T + G KA + + +L ++ S PA P
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTN-MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARP 239
Query: 614 LTSPCVFPCKTYTK 655
P P + K
Sbjct: 240 TDKPLRLPLQDVYK 253
Score = 107 bits (258), Expect = 1e-24
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +1
Query: 511 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 690
MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 265
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 165 bits (401), Expect = 5e-42
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +3
Query: 3 TIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRD 182
TIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRD
Sbjct: 38 TIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRD 97
Query: 183 FIKNMITGTSQADCAVLIVAAGTG 254
FIKNMITGTSQADCA+LI+ GTG
Sbjct: 98 FIKNMITGTSQADCAILIIGGGTG 121
Score = 131 bits (316), Expect = 1e-31
Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 257 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 436
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVG 180
Query: 437 YNPAAVAFVPISGWHGDNMLEPSTKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPA-P 613
+NP V FVP+SG+ GDNM+EP+T + G KA + + +L ++ S PA P
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTN-MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARP 239
Query: 614 LTSPCVFPCKTYTK 655
P P + K
Sbjct: 240 TDKPLRLPLQDVYK 253
Score = 107 bits (258), Expect = 1e-24
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +1
Query: 511 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 690
MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 265
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 165 bits (401), Expect = 5e-42
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +3
Query: 3 TIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRD 182
TIEKFEKEA E+GKGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRD
Sbjct: 38 TIEKFEKEATELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRD 97
Query: 183 FIKNMITGTSQADCAVLIVAAGTG 254
FIKNMITGTSQADCA+LI+ GTG
Sbjct: 98 FIKNMITGTSQADCAILIIGGGTG 121
Score = 131 bits (316), Expect = 1e-31
Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Frame = +2
Query: 257 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 436
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVG 180
Query: 437 YNPAAVAFVPISGWHGDNMLEPSTKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPA-P 613
+NP V FVP+SG+ GDNM+EP+T + G KA + + +L ++ S PA P
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTN-MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARP 239
Query: 614 LTSPCVFPCKTYTK 655
P P + K
Sbjct: 240 TDKPLRLPLQDVYK 253
Score = 107 bits (258), Expect = 1e-24
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +1
Query: 511 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 690
MPW++GWQ E K G GK L+EA+D+I PPARPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 265
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/85 (51%), Positives = 55/85 (64%)
Frame = +3
Query: 3 TIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRD 182
+++K EA GKGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRD
Sbjct: 208 SMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRD 267
Query: 183 FIKNMITGTSQADCAVLIVAAGTGN 257
FI MI G S AD AVL+V + N
Sbjct: 268 FISGMIAGASSADFAVLVVDSSQNN 292
Score = 77.4 bits (182), Expect = 2e-15
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKI 433
FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +
Sbjct: 293 FERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMV 350
Query: 434 GYNPAAVAFVPISGWHGDNMLEPSTKCL 517
G+ + V FVPIS G N+++ + L
Sbjct: 351 GFKTSNVHFVPISAISGTNLIQKDSSDL 378
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +1
Query: 562 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 690
G L+ ALD ++PP +P KPLRL + DVY+ TV GRV
Sbjct: 384 GPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRV 425
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = +3
Query: 3 TIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRD 182
T+EK E+EA+E GK S+ +W LD ERE+G T+++ FET +++DAPGH+
Sbjct: 269 TMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKG 328
Query: 183 FIKNMITGTSQADCAVLIVAAGTG 254
++ NMI G SQAD VL+++A G
Sbjct: 329 YVTNMINGASQADIGVLVISARRG 352
Score = 74.5 bits (175), Expect = 1e-14
Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +2
Query: 239 SCRYR*FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 418
S R FEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S
Sbjct: 348 SARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSM 407
Query: 419 YIKKI-GYNPAA-VAFVPISGWHGDNM 493
+++++ GYN V ++P+S + G N+
Sbjct: 408 FLRRVAGYNSKTDVKYMPVSAYTGQNV 434
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = +3
Query: 33 EMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 212
++G+ SF +DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 213 QADCAVLIVAAGTG 254
D A+++V+A G
Sbjct: 139 TMDGAIIVVSATDG 152
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 284 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 421
QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 571 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRV 690
L+EA+D+ + P R TD P + ++DV+ I G GTV GRV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRV 274
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 66 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 245
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 246 GTG 254
G
Sbjct: 127 SAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 69 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 236
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 237 VAAGTG 254
V A G
Sbjct: 155 VDASQG 160
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 39 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTS 212
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 213 QADCAVLIVAAGTG 254
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.068
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 19/81 (23%)
Frame = +3
Query: 69 LDKLKAERERGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDFIK 191
+D ++ ERE+GITI A W+ FE S Y + IID PGH DF
Sbjct: 102 MDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTI 160
Query: 192 NMITGTSQADCAVLIVAAGTG 254
+ D AVL++ A +G
Sbjct: 161 EVERALRVLDGAVLVLCAVSG 181
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 147 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 242
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 317 LGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNML 496
L + + + KMD E + E +F + + S++K+ F+PISG G N+
Sbjct: 407 LSISSYMFAITKMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNLT 464
Query: 497 EPSTKCL 517
S + L
Sbjct: 465 SISQEKL 471
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 144 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 254
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +3
Query: 72 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 194
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 156 IIDAPGHRDFIKNMITGTSQADCAVLIV 239
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 144 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 239
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 144 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 239
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 87 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 239
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 99 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI-VAAGTGNSKLVSL 275
G D ++K + + + + PGH D I+++ S LI A GN ++ +
Sbjct: 189 GCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKV 248
Query: 276 RTV 284
T+
Sbjct: 249 ETL 251
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 133 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 2
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 99 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 1
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 375 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 464
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,905
Number of Sequences: 5004
Number of extensions: 67313
Number of successful extensions: 238
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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