Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20950
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   3e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           85   4e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              65   6e-11
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     44   2e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              33   0.29 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.38 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 30   2.0  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_50691| Best HMM Match : C2 (HMM E-Value=2.8e-17)                    28   6.2  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   6.2  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (310), Expect = 3e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +3

Query: 36  MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 215
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 46/68 (67%), Positives = 51/68 (75%), Gaps = 6/68 (8%)
 Frame = +1

Query: 505 NQMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGI 666
           +QMPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDVYKIGGI
Sbjct: 59  SQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGGI 118

Query: 667 GTVPVGRV 690
           GTVPVGRV
Sbjct: 119 GTVPVGRV 126


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 34/84 (40%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   TIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRD 182
           T+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T++DAPGH+ 
Sbjct: 175 TLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKS 234

Query: 183 FIKNMITGTSQADCAVLIVAAGTG 254
           F+ NMI+G +QAD  VL+++A  G
Sbjct: 235 FVPNMISGATQADLGVLVISARKG 258



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +2

Query: 239 SCRYR*FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 418
           S R   FE G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ 
Sbjct: 254 SARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTP 313

Query: 419 YIKKIGYNP 445
           ++KK+G+NP
Sbjct: 314 FLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = +3

Query: 108 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 254
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TG
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +2

Query: 257 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 358
           FEAG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 51  FEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 21  KEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 200
           +EA  +     K     D ++ ER+RGI++  ++  F      + I+D PGH+DF ++  
Sbjct: 38  QEAGAVKSNKIKKGATSDFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTF 97

Query: 201 TGTSQADCAVLIVAAGTG 254
              +  D  ++++    G
Sbjct: 98  RTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 150 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 254
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
 Frame = +3

Query: 72  DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 212
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQ 124

Query: 213 -QADCAVLIVAAGTGNSKLVSLR 278
              +C    +  G G S  V +R
Sbjct: 125 IIGECGT--IEGGFGQSGKVKIR 145


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 99  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 245
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 75  KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 242
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 156 IIDAPGHRDFIKNMITGTSQADCAVLIV 239
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 443  PAAVAFVPISGWHGDNMLE--PSTKCLGSRDGRWSVKKAKLTENASLKLSMPSCH 601
            P    ++ IS   G ++ +  P TKC    +GRW   K  +T N         CH
Sbjct: 1581 PIDAIYIEISNTLGHSLRDSLPVTKCFKRLEGRWEEYKNTITSNEITSPIQVVCH 1635


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 66   VLDKLKAERERGITI 110
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991


>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 325 DTEGESEQGMLTGLTVLRDTSFELP-VPAATMSTAQS 218
           D+E E EQ  ++ L+V+ D +F++P VPA+  S++ S
Sbjct: 56  DSEEEKEQFTMSVLSVVVDVTFKVPVVPASDDSSSSS 92


>SB_50691| Best HMM Match : C2 (HMM E-Value=2.8e-17)
          Length = 430

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 150 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGNSKLVSL 275
           V ++D P  +DFI  ++  +   +  VL+VA  +G SKL+S+
Sbjct: 265 VQVMDIPMLKDFINALVMDSLTYESGVLLVALHSG-SKLLSM 305


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 144 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 254
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 359  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 499
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 503 STKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLTSP 625
           S++ L     RWS  KAK   +  +K S P  H   PL  P
Sbjct: 514 SSQSLNKSRARWSTTKAKQPFSVVVKESKPIPHPVTPLLPP 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,879,478
Number of Sequences: 59808
Number of extensions: 530930
Number of successful extensions: 1553
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)