Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20949
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 165 3e-41
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 165 3e-41
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 158 3e-39
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 152 3e-37
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 8e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 8e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 103 9e-23
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 2e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 2e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 2e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 2e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 41 0.001
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 36 0.035
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.062
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.11
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.14
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.14
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.25
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.76
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.76
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.3
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.3
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.3
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.3
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.4
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 165 bits (400), Expect = 3e-41
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
TREHALLA TLGVKQLIV NKMD
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMD 156
Score = 152 bits (368), Expect = 3e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 81.0 bits (191), Expect = 7e-16
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +1
Query: 508 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 657
STEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 157 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSS 206
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 165 bits (400), Expect = 3e-41
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
TREHALLA TLGVKQLIV NKMD
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMD 156
Score = 152 bits (368), Expect = 3e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 81.0 bits (191), Expect = 7e-16
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +1
Query: 508 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 657
STEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 157 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSS 206
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 158 bits (384), Expect = 3e-39
Identities = 88/129 (68%), Positives = 93/129 (72%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCP 616
TREHALLA TLGVKQL+ L T SPD +SRR T Q L
Sbjct: 133 TREHALLAQTLGVKQLV-------SLRSPTRSPD----------SSRRSDTIQRLFHLSQ 175
Query: 617 FLDGTETTC 643
D TETTC
Sbjct: 176 SPDSTETTC 184
Score = 152 bits (368), Expect = 3e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 152 bits (368), Expect = 3e-37
Identities = 70/71 (98%), Positives = 70/71 (98%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAERERGI 254
DKLKAERERGI
Sbjct: 61 DKLKAERERGI 71
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 391
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 81.0 bits (191), Expect = 7e-16
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +1
Query: 508 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPST 657
STEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 123 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSS 172
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 221
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 222 DKLKAER 242
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (273), Expect = 8e-26
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLN 517
T+EHALL +LGV QLIV VNK+D ++
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNKLDTVD 322
Score = 88.6 bits (210), Expect = 4e-18
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +3
Query: 51 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 231 KAERERGI 254
+ ERERG+
Sbjct: 227 EEERERGV 234
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 523 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 648
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 363
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (273), Expect = 8e-26
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLN 517
T+EHALL +LGV QLIV VNK+D ++
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNKLDTVD 340
Score = 88.6 bits (210), Expect = 4e-18
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +3
Query: 51 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 230
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 231 KAERERGI 254
+ ERERG+
Sbjct: 245 EEERERGV 252
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +1
Query: 523 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLE 648
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK 381
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 103 bits (248), Expect = 9e-23
Identities = 45/84 (53%), Positives = 61/84 (72%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
TREH++L T GVK L++ VNKMD
Sbjct: 235 TREHSMLVKTAGVKHLVILVNKMD 258
Score = 82.2 bits (194), Expect = 3e-16
Identities = 35/69 (50%), Positives = 50/69 (72%)
Frame = +3
Query: 45 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 224
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 225 KLKAERERG 251
ERE+G
Sbjct: 164 TNDEEREKG 172
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +1
Query: 523 YSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHG 633
+ E RF+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTT 113
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 437 TREHALLAFTLGVKQLIVGVNKMD 508
T+EH +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 54 KTHINIVVIGHVDSGKSTTT 113
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 454
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 455 LAFTLGV--KQLIVGVNKMD 508
LA +GV ++V +NK+D
Sbjct: 159 LARQVGVPLDNIVVFMNKVD 178
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 454
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 455 LAFTLGV--KQLIVGVNKMD 508
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.5 bits (155), Expect = 2e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 275 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 454
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 455 LAFTLGV--KQLIVGVNKMD 508
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 48 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 218
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 219 LDKLKAER 242
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 479 QLIVGVNKMDPLNHHTVSPDLRKSRR 556
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 63 INIVVIGHVDSGKSTTT 113
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/73 (39%), Positives = 34/73 (46%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 479 QLIVGVNKMDPLN 517
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 35.5 bits (78), Expect = 0.035
Identities = 27/63 (42%), Positives = 32/63 (50%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 246 RGI 254
RGI
Sbjct: 74 RGI 76
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.062
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 472
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 473 VKQLIVGVNKMD 508
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 182
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +2
Query: 296 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 475
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 476 KQLIVGVNKMD 508
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 254 PIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
P+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 188 PVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 254 PIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
P+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 63 PVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 501 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 373
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 66 NIVVIGHVDSGKSTTTGHLIYKCGGID 146
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.7 bits (61), Expect = 4.1
Identities = 29/92 (31%), Positives = 37/92 (40%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 479 QLIVGVNKMDPLNHHTVSPDLRKSRRKYPHTS 574
I VNKMD N T L R K H +
Sbjct: 166 PFICFVNKMD-RNGATPLKALDGLRNKLNHNA 196
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 42 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 137
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +2
Query: 305 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 484
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 485 IVGVNKMDPLNHHTVSP 535
++ +NK+D L + +P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 18 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 128
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 18 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 128
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 144 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 144 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 245
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 563 PHTSRRLATTQLLSLSCPFLD 625
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 563 PHTSRRLATTQLLSLSCPFLD 625
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 563 PHTSRRLATTQLLSLSCPFLD 625
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 563 PHTSRRLATTQLLSLSCPFLD 625
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 63 INIVVIGHVDSGKSTTT 113
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 299 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 394
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 299 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 388
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = -1
Query: 331 ISVSRSINDGNIVLASFELPESNIDWI---PRSRSAFSLSNTQAYL 203
I++ +++NDG+++ A + +I W+ P+ RSA S ++ A L
Sbjct: 221 IALKKNVNDGSVIHARIQTILDDILWVATLPQLRSAISFASYIAKL 266
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 484 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 326
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 325 VSRSINDGNI 296
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,079
Number of Sequences: 27780
Number of extensions: 347408
Number of successful extensions: 1186
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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