Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20947
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 29 0.87
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.6
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 3.5
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 26 6.1
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 26 6.1
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 26 6.1
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 26 6.1
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 8.1
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 28.7 bits (61), Expect = 0.87
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 260 PTEISGS*TESHE*KVDSQHRPQP--KTTIEEFNENRGSIPN*KWNFQDLEQTILDTQT 430
P++ + + E E S+H+PQP KTT + S P K N D+ +T L QT
Sbjct: 583 PSQTANNVHEIREPSFSSEHKPQPSLKTTTDV------SSPETKQNIADIRKTTLTDQT 635
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Frame = +2
Query: 467 GVPGADLKVRRKPIVPEIPESCKKIGICDKIPN-------YPREQVEKIVAKLGEKTEFQ 625
G+P L + P P + S + + IPN YP E + +KLG++ +
Sbjct: 145 GIPDG-LVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTA 203
Query: 626 FDKLDLPSIPDIAQRTGSFEDSYELCDFR 712
L P D R +F ++ + FR
Sbjct: 204 LSALFPPDPKDTTPRVVTFANTDDYISFR 232
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 492 TLRSAPGTPPCLPESRPFEQIVCVS 418
T SAP PP +P SRP E++ +S
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLS 249
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 288 NRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHR 428
N RS H QRLQ ST +E R ++ T K N P + +
Sbjct: 742 NATHARSTSQVSHTQRLQQSISTSLE---RVKSNTKKESNSPRQVSK 785
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 509 VPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLPSIPDIA 664
VPE K+I CDK P P + + G++ F+ K PSI IA
Sbjct: 514 VPEYMRLAKRIATCDK-PEDPHQ----FKLQSGDQNTFRISKKKKPSICPIA 560
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 135 FTYSVVVF*NGTDTRFHLLVFRNVNISL 218
FT++VV + + + R+ ++VFRN I++
Sbjct: 37 FTWNVVQYLSNLEKRYPIMVFRNDEITV 64
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 597 LSWARKQSFNSTNWTYLRYRISPSG 671
+S A ++ NSTNW +R++ P G
Sbjct: 450 VSNAHFENLNSTNWQSMRFKPPPPG 474
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 575 EQVEKIVAKLGEKTEFQFDK 634
E++EK+ + EKTE FDK
Sbjct: 483 EEIEKLALLIKEKTEIVFDK 502
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.8 bits (54), Expect = 6.1
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +3
Query: 285 PNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKIL-NKPFSIHRRF-AQTDDSPG 458
P+ + S +NT +Q L RSS+ R +NGT N PFS QT +
Sbjct: 90 PSTQNVGSTNNTRASQSLLRRSSSFFRRRHR-KNGTHASTDNNPFSESSTLQPQTAERTS 148
Query: 459 DRVVFPGLTSRSGVNP*SQKSRSRARKLASV 551
+ V +T + + Q S S + A++
Sbjct: 149 QQAVRSAITETTNPSVSVQNSNSTSTSSAAM 179
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 584 EKIVAKLGE---KTEFQFDKLDLPSIPDIAQRTGSFEDSYE 697
E AK G+ + EF+ KL+ PD+A G F D E
Sbjct: 214 EAAAAKAGKSEWEIEFEKFKLEQKKQPDVASSDGDFSDEPE 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,539
Number of Sequences: 5004
Number of extensions: 70936
Number of successful extensions: 217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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