Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20947
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    30   1.6  
08_02_1325 - 26146775-26147247,26147397-26148579                       29   4.8  
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    29   4.8  
05_06_0124 - 25822176-25822633,25822738-25825420                       29   4.8  
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759...    28   8.4  

>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 503 PIVPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLP 646
           P +P + E C + G+   +P YP ++  K + K+G+      ++ DLP
Sbjct: 239 PRIPALVELCIQAGV--NLPEYPTKRRRKPIIKIGKNEFVDANEDDLP 284


>08_02_1325 - 26146775-26147247,26147397-26148579
          Length = 551

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 301 KGRFTTQTTTKDYNRGVQRKSRKHPELKMELSRS*TNHSRYTDDLLKRTTLR 456
           K R   +   K+ +R   + S+KH   K +  R   +  RYT+  L++ TLR
Sbjct: 26  KERRGRERKEKNSDRRKDKHSKKHKREKHKDKRKNKDDDRYTNQTLEKATLR 77


>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +2

Query: 197 P*CQYQPTNTDRMTSRIRLKSPTEISGS*TESHE*KVDSQHRPQPKTTIEEFNENRGSIP 376
           P   YQ  +++ +  R+R+  P E+S S   SH   + +Q    PK  +   N+    + 
Sbjct: 311 PAIDYQSADSEHLMKRMRVGQPDEVSFS-GASHPANIYTQD-DLPKQVVRNLNQGSNVM- 367

Query: 377 N*KWNFQDLEQTIL 418
               +F  ++QTIL
Sbjct: 368 --SLDFHPVQQTIL 379


>05_06_0124 - 25822176-25822633,25822738-25825420
          Length = 1046

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 353 NENRGSIPN*KWNFQDLEQTILDTQTICSNGRLSGRQGGVPGADLKVRRKPIVPEIPES 529
           N   GSIP   WN   L+   L T  +  +  ++G+ G      L +    +   IPES
Sbjct: 256 NSFTGSIPPGIWNIPKLQYLFLYTNQLTGDVVVNGKIGAASLIYLDISENQLTGTIPES 314


>07_03_0810 -
           21674710-21674960,21675318-21675405,21675739-21675990,
           21676521-21676685,21677358-21678494
          Length = 630

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 515 EIPESCKKIGICDKIPNYPREQV 583
           E+ ++C +I ICD +PN+  E +
Sbjct: 434 EVEDACAEICICDWLPNWRNENI 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,376,894
Number of Sequences: 37544
Number of extensions: 441617
Number of successful extensions: 1187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)