Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20947
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0) 31 0.92
SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_58035| Best HMM Match : Casein (HMM E-Value=1.9) 30 2.1
SB_1167| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7) 29 2.8
SB_53163| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82) 29 2.8
SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5) 29 4.9
SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10) 28 6.5
SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
Length = 876
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 470 VPGADLKVRRKPIVPEIPESCKKIGICDKIPNYP-REQVEKI 592
+PGA K+ R P ++ ESC +G DK+ + P R+ +++I
Sbjct: 352 IPGASKKLMRMP--SDVYESCMDLGTIDKLGDQPIRDMIKEI 391
>SB_44098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +3
Query: 264 QKYLAAEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQT 443
+K + N+ + + H+T Q+ + R+STK + ++ + T + L K S R +
Sbjct: 254 EKRSTNDSNKTNTKEKHSTKERQKTKERTSTKERDTNKKCDSTKRDLTKRDSTKRDSTKR 313
Query: 444 DDSPGDRVVF 473
+RVVF
Sbjct: 314 RVVTMERVVF 323
>SB_58035| Best HMM Match : Casein (HMM E-Value=1.9)
Length = 450
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 270 YLAAEPNRMSERSIHNTDHNQRLQSRSSTKIEEAS 374
YL ++P +++R HN LQS S K EEAS
Sbjct: 217 YLLSQPKILAQRQDTLDKHNSYLQSLLSVKTEEAS 251
>SB_1167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 319 QTTTKDYNRGVQRKSRKHPELKMELSRS*TNHSRYTDDLLKRTTLRETGWCSR 477
++ DY R +Q +++ + +L T+ TDDLL+ + +E WC R
Sbjct: 1 ESQNSDYLRQLQEENQSLKDECEKLRVQNTDLKMRTDDLLEALSKKEAQWCER 53
>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
Length = 245
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 452 SGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYP 571
S GGVPGA V + P +P ++ D+IP+ P
Sbjct: 88 SALHGGVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVP 127
>SB_53163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 319 QTTTKDYNRGVQRKSRKHPELKMELSRS*TNHSRYTDDLLKRTTLRETGWCSR 477
++ DY R +Q +++ + +L T+ TDDLL+ + +E WC R
Sbjct: 90 ESQNSDYLRQLQEENQSLKDECEKLLVQNTDLKMRTDDLLEALSKKEAQWCER 142
>SB_42713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 319 QTTTKDYNRGVQRKSRKHPELKMELSRS*TNHSRYTDDLLKRTTLRETGWCSR 477
++ DY R +Q +++ + +L + TDDLL+ + +ET WC R
Sbjct: 139 ESQNSDYLRQLQEENQSLKDECEKLRVQNIDLKMRTDDLLEALSKKETQWCER 191
>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
Length = 167
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 264 QKYLAAEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILN 407
QK+L NR+ + H T+++ R+ ST + A+ N +LN
Sbjct: 67 QKHLTEYSNRIYKHQKHITEYSNRIYKHQSTLLNTATEYTNTKSTLLN 114
>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
Length = 1362
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/97 (27%), Positives = 44/97 (45%)
Frame = +3
Query: 291 RMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQTDDSPGDRVV 470
+ +E+ + H Q + + TK+ T NG + N P RR Q D + +
Sbjct: 965 KTTEQWANGRIHRQNEKEMNDTKLNTTEHTANGKIAVANDPQI--RRVGQ-DIFLKESMT 1021
Query: 471 FPGLTSRSGVNP*SQKSRSRARKLASVTRYRITQENK 581
P +SGV P + K +KL S+ R+ I+ EN+
Sbjct: 1022 LP----KSGVTP-NGKLTPNVQKL-SLQRFDISLENR 1052
>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1585
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 422 TQTICSNGRLSGRQGGVPGADLKVRRKPIV-PEIPESCKKIGICDKIPNYPREQVEKIVA 598
+Q I +NG LS Q + + + R KPIV +I + + + + + + + +A
Sbjct: 652 SQIITTNGHLSSCQSAIKDSTISCRAKPIVRKDISSTMYQHRLLEDLSGDKQNDTARFIA 711
Query: 599 KLGEKTEFQFD 631
K K + F+
Sbjct: 712 KKVHKMQGPFN 722
>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 28.7 bits (61), Expect = 4.9
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = +3
Query: 339 QSRSSTKIEEASRTENGTFKILNKP--FSIHRRFAQTDDSPGDRV-VFPGLTSRSGVNP* 509
Q+R +T+++++ + T + ++P FSI RRFAQ+ S V PG + +
Sbjct: 218 QARVATRVKKSQIRRSET-QAESRPQTFSIRRRFAQSRGSEFSVVDCDPGAALKENIRKQ 276
Query: 510 SQKSRSRARKLASVTRYRITQENK*KRSLLSWARKQSFNSTNWTYL 647
S + R R LA + ++ K +R + RK + S ++ +
Sbjct: 277 SARRRMRRIMLADKEKAEKERQEKLERGKPT-TRKSTLKSASFAVM 321
>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
Length = 155
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 479 ADLKVRRKPIVPEIPESCKKIGI 547
AD+ RKP+ P +P+ +K+GI
Sbjct: 119 ADVDCDRKPLKPRVPDRSEKVGI 141
>SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 133 VLRIVL*CFEMARIHVFIFLFSVMS--ISAYKY 225
VLR+V+ F ++HV + L+ V+ ISAY Y
Sbjct: 86 VLRVVISAFLYPKVHVVVVLYQVLRVVISAYIY 118
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 238 QQDSPQVTHRNIWQLNRIA*VKGRFTTQTTTKDYNRGVQRKSRKHPELKMELSR 399
Q DS Q T Q I +K RFT + TKD ++ +K L+ SR
Sbjct: 1002 QSDSQQATPAMGSQQQEILRLKRRFTKDSQTKDRQYFIRMHEKKRQMLQQTQSR 1055
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,552,980
Number of Sequences: 59808
Number of extensions: 542384
Number of successful extensions: 1432
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -