Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20947
         (712 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB030240-1|BAB17229.1|  598|Homo sapiens hNBL4 protein.                33   0.76 
BC114942-1|AAI14943.1|  638|Homo sapiens EPB41L4A protein protein.     33   1.0  
AK096057-1|BAC04690.1|  338|Homo sapiens protein ( Homo sapiens ...    33   1.3  
BC022782-1|AAH22782.1|  780|Homo sapiens bromo adjacent homology...    30   7.1  
AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.     30   7.1  
AK096872-1|BAC04880.1|  374|Homo sapiens protein ( Homo sapiens ...    30   9.4  

>AB030240-1|BAB17229.1|  598|Homo sapiens hNBL4 protein.
          Length = 598

 Score = 33.5 bits (73), Expect = 0.76
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +3

Query: 291 RMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQTDDSPGDRVV 470
           R +  S  ++D  QR +SRS       S +EN   +   K   I +     D +P    V
Sbjct: 460 RKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSAPQWEAV 519

Query: 471 FPGLTSRSGVNP*SQKSRSRAR 536
                 ++  +P S++SR R+R
Sbjct: 520 LRRQKEKNQADPNSRRSRHRSR 541


>BC114942-1|AAI14943.1|  638|Homo sapiens EPB41L4A protein protein.
          Length = 638

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +3

Query: 291 RMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQTDDSPGDRVV 470
           R +  S  ++D  QR +SRS       S +EN   +   K   I +     D +P    V
Sbjct: 459 RKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNREYRKKRNRIRQENDMVDSAPQWEAV 518

Query: 471 FPGLTSRSGVNP*SQKSRSRAR 536
                 ++  +P +++SR R+R
Sbjct: 519 LRRQKEKNQADPNNRRSRHRSR 540


>AK096057-1|BAC04690.1|  338|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38738 fis, clone KIDNE2011508, highly similar to
           Homo sapiens mRNA for hNBL4. ).
          Length = 338

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +3

Query: 291 RMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQTDDSPGDRVV 470
           R +  S  ++D  QR +SRS       S +EN   +   K   I +     D +P    V
Sbjct: 86  RKAHDSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSAPQWEAV 145

Query: 471 FPGLTSRSGVNP*SQKSRSRAR 536
                 ++  +P S++SR R+R
Sbjct: 146 LRRQKEKNQADPNSRRSRHRSR 167


>BC022782-1|AAH22782.1|  780|Homo sapiens bromo adjacent homology
           domain containing 1 protein.
          Length = 780

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 437 SNGRLSGRQGGVPGADLKVRRKPIVPEIPESCK 535
           S G L+GR+   P     +R++P+VPE P++CK
Sbjct: 44  SPGHLTGRRKNYP-----LRKRPLVPEKPKACK 71


>AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.
          Length = 797

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 437 SNGRLSGRQGGVPGADLKVRRKPIVPEIPESCK 535
           S G L+GR+   P     +R++P+VPE P++CK
Sbjct: 62  SPGHLTGRRKNYP-----LRKRPLVPEKPKACK 89


>AK096872-1|BAC04880.1|  374|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39553 fis, clone RECTM2000510. ).
          Length = 374

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 27/104 (25%), Positives = 44/104 (42%)
 Frame = +3

Query: 72  GQVEMHLLCDRRERKSVAKRCFTYSVVVF*NGTDTRFHLLVFRNVNISLQIQTE*PAGFA 251
           G+ E   L +R  +++V       S +V     +  FH       N+  QIQ E   G +
Sbjct: 250 GKEEQPQLLERIPKENVTPEVLDRSQLVEKPVMNDPFHKTPEGPGNME-QIQPEGIVG-S 307

Query: 252 SSHPQKYLAAEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTE 383
             HP + + A       RSIH  + +QR++  +  K+E     E
Sbjct: 308 MEHPARNVEAGAYVEMIRSIHTNEEDQRIEGETGEKVETDMENE 351


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,273,296
Number of Sequences: 237096
Number of extensions: 2528452
Number of successful extensions: 5961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5953
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)