Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20947
(712 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 33 0.38
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 33 0.38
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 29 6.2
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 29 6.2
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 29 6.2
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 29 6.2
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 29 6.2
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 29 6.2
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 29 6.2
S61883-1|AAB26991.2| 2068|Drosophila melanogaster transcription ... 29 8.2
BT024196-1|ABC86258.1| 1964|Drosophila melanogaster RE63802p pro... 29 8.2
BT004888-1|AAO47866.1| 2096|Drosophila melanogaster RE74933p pro... 29 8.2
BT003608-1|AAO39611.1| 377|Drosophila melanogaster GH19274p pro... 29 8.2
BT003318-1|AAO25078.1| 517|Drosophila melanogaster AT26991p pro... 29 8.2
BT001317-1|AAN71072.1| 517|Drosophila melanogaster AT15066p pro... 29 8.2
AL121806-13|CAB65886.1| 602|Drosophila melanogaster EG:33C11.3 ... 29 8.2
AE014298-168|AAF45597.2| 655|Drosophila melanogaster CG3638-PA,... 29 8.2
AE014298-167|AAN09038.1| 639|Drosophila melanogaster CG3638-PB,... 29 8.2
AE014298-166|AAN09037.1| 1201|Drosophila melanogaster CG3638-PC,... 29 8.2
AE014298-165|AAN09036.1| 1404|Drosophila melanogaster CG3638-PD,... 29 8.2
AE014297-491|AAF54102.3| 2065|Drosophila melanogaster CG17603-PA... 29 8.2
AE014297-490|AAS65117.1| 2098|Drosophila melanogaster CG17603-PC... 29 8.2
AE014297-489|AAS65116.1| 2129|Drosophila melanogaster CG17603-PB... 29 8.2
AE014296-204|AAN11465.1| 517|Drosophila melanogaster CG9130-PB,... 29 8.2
AE014296-203|AAN11464.1| 517|Drosophila melanogaster CG9130-PA,... 29 8.2
AE001572-25|AAD19815.1| 2065|Drosophila melanogaster transcripti... 29 8.2
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 33.1 bits (72), Expect = 0.38
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 562 RYLVTDAN-FLARLRDFWDYGFTPDLEVSPGNTTLSPGESSV*ANRLCIENGLFKILKVP 386
RY + D N LA+L D + L++ G + ES + I NG ++ ++P
Sbjct: 267 RYPIPDINEVLAQLGDNKIFSV---LDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLP 323
Query: 385 FSVRDASSIFVELLD 341
F +++A SIF LD
Sbjct: 324 FGLKNAPSIFQRALD 338
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 33.1 bits (72), Expect = 0.38
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 562 RYLVTDAN-FLARLRDFWDYGFTPDLEVSPGNTTLSPGESSV*ANRLCIENGLFKILKVP 386
RY + D N LA+L D + L++ G + ES + I NG ++ ++P
Sbjct: 110 RYPIPDINEVLAQLGDNKIFSV---LDLKSGFHQILLKESDIEKTAFSINNGKYEFTRLP 166
Query: 385 FSVRDASSIFVELLD 341
F +++A SIF LD
Sbjct: 167 FGLKNAPSIFQRALD 181
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 421 IENGLFKILKVPFSVRDASSIFVELLD 341
+ G ++ ++PF +R+ASSIF LD
Sbjct: 279 VNGGKYEFCRLPFGLRNASSIFQRALD 305
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 421 IENGLFKILKVPFSVRDASSIFVELLD 341
+ G ++ ++PF +R+ASSIF LD
Sbjct: 274 VNGGKYEFCRLPFGLRNASSIFQRALD 300
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 421 IENGLFKILKVPFSVRDASSIFVELLD 341
+ G ++ ++PF +R+ASSIF LD
Sbjct: 309 VNGGKYEFCRLPFGLRNASSIFQRALD 335
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 421 IENGLFKILKVPFSVRDASSIFVELLD 341
+ G ++ ++PF +R+ASSIF LD
Sbjct: 309 VNGGKYEFCRLPFGLRNASSIFQRALD 335
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 421 IENGLFKILKVPFSVRDASSIFVELLD 341
+ G ++ ++PF +R+ASSIF LD
Sbjct: 274 VNGGKYEFCRLPFGLRNASSIFQRALD 300
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 421 IENGLFKILKVPFSVRDASSIFVELLD 341
+ G ++ ++PF +R+ASSIF LD
Sbjct: 274 VNGGKYEFCRLPFGLRNASSIFQRALD 300
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 421 IENGLFKILKVPFSVRDASSIFVELLD 341
+ G ++ ++PF +R+ASSIF LD
Sbjct: 727 VNGGKYEFCRLPFGLRNASSIFQRALD 753
>S61883-1|AAB26991.2| 2068|Drosophila melanogaster transcription
factor TFIID 230kda subunit protein.
Length = 2068
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 449 LSGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYPREQVEK 589
LSGR G + A+ P++ ++G+C KI NY + + EK
Sbjct: 719 LSGRDGDIVLAEFCEEHPPLI-------NQVGMCSKIKNYYKRKAEK 758
>BT024196-1|ABC86258.1| 1964|Drosophila melanogaster RE63802p
protein.
Length = 1964
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 449 LSGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYPREQVEK 589
LSGR G + A+ P++ ++G+C KI NY + + EK
Sbjct: 716 LSGRDGDIVLAEFCEEHPPLI-------NQVGMCSKIKNYYKRKAEK 755
>BT004888-1|AAO47866.1| 2096|Drosophila melanogaster RE74933p
protein.
Length = 2096
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 449 LSGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYPREQVEK 589
LSGR G + A+ P++ ++G+C KI NY + + EK
Sbjct: 716 LSGRDGDIVLAEFCEEHPPLI-------NQVGMCSKIKNYYKRKAEK 755
>BT003608-1|AAO39611.1| 377|Drosophila melanogaster GH19274p
protein.
Length = 377
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 518 IPESCKKIGICDKIPNYPREQVEKIVAKLGEKTE 619
I + +K G C IP YPR EK+ A+L K E
Sbjct: 230 IEQKLQKCGPCGGIPPYPRFIQEKMQAELLNKPE 263
>BT003318-1|AAO25078.1| 517|Drosophila melanogaster AT26991p
protein.
Length = 517
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 518 IPESCKKIGICDKIPNYPREQVEKIVAKLGEKTE 619
I + +K G C IP YPR EK+ A+L K E
Sbjct: 370 IEQKLQKCGPCGGIPPYPRFIQEKMQAELLNKPE 403
>BT001317-1|AAN71072.1| 517|Drosophila melanogaster AT15066p
protein.
Length = 517
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 518 IPESCKKIGICDKIPNYPREQVEKIVAKLGEKTE 619
I + +K G C IP YPR EK+ A+L K E
Sbjct: 370 IEQKLQKCGPCGGIPPYPRFIQEKMQAELLNKPE 403
>AL121806-13|CAB65886.1| 602|Drosophila melanogaster EG:33C11.3
protein.
Length = 602
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 96 CDRRERKSVAKRCFTYSVVV 155
CDRR+RK A+RC + S+V+
Sbjct: 70 CDRRQRKPSAQRCQSCSLVI 89
>AE014298-168|AAF45597.2| 655|Drosophila melanogaster CG3638-PA,
isoform A protein.
Length = 655
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 96 CDRRERKSVAKRCFTYSVVV 155
CDRR+RK A+RC + S+V+
Sbjct: 82 CDRRQRKPSAQRCQSCSLVI 101
>AE014298-167|AAN09038.1| 639|Drosophila melanogaster CG3638-PB,
isoform B protein.
Length = 639
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 96 CDRRERKSVAKRCFTYSVVV 155
CDRR+RK A+RC + S+V+
Sbjct: 66 CDRRQRKPSAQRCQSCSLVI 85
>AE014298-166|AAN09037.1| 1201|Drosophila melanogaster CG3638-PC,
isoform C protein.
Length = 1201
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 96 CDRRERKSVAKRCFTYSVVV 155
CDRR+RK A+RC + S+V+
Sbjct: 82 CDRRQRKPSAQRCQSCSLVI 101
>AE014298-165|AAN09036.1| 1404|Drosophila melanogaster CG3638-PD,
isoform D protein.
Length = 1404
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 96 CDRRERKSVAKRCFTYSVVV 155
CDRR+RK A+RC + S+V+
Sbjct: 82 CDRRQRKPSAQRCQSCSLVI 101
>AE014297-491|AAF54102.3| 2065|Drosophila melanogaster CG17603-PA,
isoform A protein.
Length = 2065
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 449 LSGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYPREQVEK 589
LSGR G + A+ P++ ++G+C KI NY + + EK
Sbjct: 716 LSGRDGDIVLAEFCEEHPPLI-------NQVGMCSKIKNYYKRKAEK 755
>AE014297-490|AAS65117.1| 2098|Drosophila melanogaster CG17603-PC,
isoform C protein.
Length = 2098
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 449 LSGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYPREQVEK 589
LSGR G + A+ P++ ++G+C KI NY + + EK
Sbjct: 716 LSGRDGDIVLAEFCEEHPPLI-------NQVGMCSKIKNYYKRKAEK 755
>AE014297-489|AAS65116.1| 2129|Drosophila melanogaster CG17603-PB,
isoform B protein.
Length = 2129
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 449 LSGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYPREQVEK 589
LSGR G + A+ P++ ++G+C KI NY + + EK
Sbjct: 716 LSGRDGDIVLAEFCEEHPPLI-------NQVGMCSKIKNYYKRKAEK 755
>AE014296-204|AAN11465.1| 517|Drosophila melanogaster CG9130-PB,
isoform B protein.
Length = 517
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 518 IPESCKKIGICDKIPNYPREQVEKIVAKLGEKTE 619
I + +K G C IP YPR EK+ A+L K E
Sbjct: 370 IEQKLQKCGPCGGIPPYPRFIQEKMQAELLNKPE 403
>AE014296-203|AAN11464.1| 517|Drosophila melanogaster CG9130-PA,
isoform A protein.
Length = 517
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 518 IPESCKKIGICDKIPNYPREQVEKIVAKLGEKTE 619
I + +K G C IP YPR EK+ A+L K E
Sbjct: 370 IEQKLQKCGPCGGIPPYPRFIQEKMQAELLNKPE 403
>AE001572-25|AAD19815.1| 2065|Drosophila melanogaster transcription
factor protein.
Length = 2065
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 449 LSGRQGGVPGADLKVRRKPIVPEIPESCKKIGICDKIPNYPREQVEK 589
LSGR G + A+ P++ ++G+C KI NY + + EK
Sbjct: 716 LSGRDGDIVLAEFCEEHPPLI-------NQVGMCSKIKNYYKRKAEK 755
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,733,317
Number of Sequences: 53049
Number of extensions: 782192
Number of successful extensions: 2325
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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