Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20947
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 85  CIYCVTGASVSQSPNVVLRIVL 150
           C YC++GA + +  + VL + +
Sbjct: 323 CYYCISGAPIERPDHAVLCVYM 344


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +1

Query: 28  SIFSRAYVIQHIINVDKSKCIYCVTGASVSQSPNVVLRIVL*CFEMARIH 177
           SI   +Y+ +   ++D     YC  G     SPN  + + +   +  R H
Sbjct: 65  SIHEESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRH 114


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 322 TTTKDYNRGVQRKSRKHPELKMELSRS*TNHSRYTDDLLKRTTL 453
           T  K + + ++ + RKH   K +LSR      R  + L  +T L
Sbjct: 91  TKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGL 134


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 566  NSVSCHRCQFSCTTPGFL 513
            NSV+  R Q S T+ GFL
Sbjct: 978  NSVTALRAQMSATSQGFL 995


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 10  TVHVSISIFSRAYVIQHIINVDKSKCIYCVTG 105
           TV V + +F   +V    +N+  S C  C++G
Sbjct: 273 TVGVIMGVFLICWVPFFCVNIVTSYCKTCISG 304


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 223 YRQNDQQDSPQVTHRNIWQLNRI 291
           + +ND+ +SP++     W++N I
Sbjct: 81  FLKNDESESPKLNPYPNWEMNDI 103


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +3

Query: 252 SSHPQKYLAAEPNRMSERSIHNTDHNQRLQSR 347
           S+HPQ    A+P +  ++        Q+ Q +
Sbjct: 819 STHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQ 850


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,789
Number of Sequences: 438
Number of extensions: 5033
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)