Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20947
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57610.1 68418.m07197 protein kinase family protein similar t...    32   0.43 
At5g57930.2 68418.m07247 expressed protein                             30   1.7  
At5g57930.1 68418.m07246 expressed protein                             30   1.7  
At3g44910.1 68416.m04838 cation/hydrogen exchanger, putative (CH...    29   2.3  
At5g25280.2 68418.m02999 serine-rich protein-related contains so...    29   4.0  
At5g25280.1 68418.m02998 serine-rich protein-related contains so...    29   4.0  
At5g44100.1 68418.m05396 casein kinase, putative similar to dual...    27   9.3  
At4g31570.1 68417.m04483 expressed protein                             27   9.3  
At4g28690.1 68417.m04099 expressed protein                             27   9.3  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    27   9.3  
At3g58710.1 68416.m06543 WRKY family transcription factor contai...    27   9.3  

>At5g57610.1 68418.m07197 protein kinase family protein similar to
           protein kinase [Glycine max] GI:170047, MAP3K delta-1
           protein kinase [Arabidopsis thaliana] GI:2253010;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1054

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 476 GADLKVRRKPIVPEIPESCKKIGI--CDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLPS 649
           GA+L V R   +PE+ ES K+  +    ++  +P E  +++  +L E      +  D P 
Sbjct: 687 GAELSVERLSFLPELMESVKRAALEGAAEVKAHPEEAKDQVRPELVENESEHMNAQDEPE 746

Query: 650 IPDIAQRTGSFE 685
           I   +    +F+
Sbjct: 747 IDSDSDNPNNFK 758


>At5g57930.2 68418.m07247 expressed protein
          Length = 443

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 503 PIVPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLP 646
           P VP + E C + G+  +IP +P ++  K + ++G+      D+ +LP
Sbjct: 232 PRVPAVVELCIQGGV--EIPEFPAKRRRKPIIRIGKSEFVDADETELP 277


>At5g57930.1 68418.m07246 expressed protein
          Length = 440

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 503 PIVPEIPESCKKIGICDKIPNYPREQVEKIVAKLGEKTEFQFDKLDLP 646
           P VP + E C + G+  +IP +P ++  K + ++G+      D+ +LP
Sbjct: 229 PRVPAVVELCIQGGV--EIPEFPAKRRRKPIIRIGKSEFVDADETELP 274


>At3g44910.1 68416.m04838 cation/hydrogen exchanger, putative
           (CHX12) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 705

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 489 LRSAPGTPPCLPESRPFEQIVCVSRMVCSRS 397
           L+ A G  PCL    PF++ +  S ++CS+S
Sbjct: 305 LKMATGMVPCLYCKIPFKEAIAASLLLCSKS 335


>At5g25280.2 68418.m02999 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +3

Query: 240 AGFASSHPQKYLAAEPNRMSERSIHNTDHNQRLQSRSSTKIE---EASRTENGTFKILNK 410
           +GFASS    +  + P+  +  S HN +++ + +S S T++     A  T++  + I N+
Sbjct: 42  SGFASSTSSSF--SSPS-TAFFSSHNQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNR 98

Query: 411 PFSIHRRFAQTDDSPGDRVVFPGLTSRSGVNP 506
             S +R  A + + P +    P    R   +P
Sbjct: 99  SISPNRSIAVSSNKPSNHHKIPDSRRRCMCSP 130


>At5g25280.1 68418.m02998 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 220

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +3

Query: 240 AGFASSHPQKYLAAEPNRMSERSIHNTDHNQRLQSRSSTKIE---EASRTENGTFKILNK 410
           +GFASS    +  + P+  +  S HN +++ + +S S T++     A  T++  + I N+
Sbjct: 42  SGFASSTSSSF--SSPS-TAFFSSHNQNNHHQHRSASPTRVNLFTSAPMTQSFRYSIDNR 98

Query: 411 PFSIHRRFAQTDDSPGDRVVFPGLTSRSGVNP 506
             S +R  A + + P +    P    R   +P
Sbjct: 99  SISPNRSIAVSSNKPSNHHKIPDSRRRCMCSP 130


>At5g44100.1 68418.m05396 casein kinase, putative similar to dual
           specificity kinase 1 gi|1216484|gb|AAB47968
          Length = 476

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 23/95 (24%), Positives = 37/95 (38%)
 Frame = +3

Query: 297 SERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQTDDSPGDRVVFP 476
           S R+ H+T       +    + E     E   +KI     +  RR   T  SP DR    
Sbjct: 305 SSRTRHHTTAKPGFNADPIERQERILGKETTRYKIPGAVEAFSRRHPTTTSSPRDR---- 360

Query: 477 GLTSRSGVNP*SQKSRSRARKLASVTRYRITQENK 581
             +  S   P S+++   + +  S +RYR +   K
Sbjct: 361 SRSRNSDDGPFSKQTHGDSERANSSSRYRASSSRK 395


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +2

Query: 551  DKIPNYPREQVEKIVAKLGEKTEFQFDKLDLPS----IPDIAQRTG 676
            +K+ N  ++  EK+V KLG +  FQ  + DL S    I D+ Q  G
Sbjct: 1666 EKLQNQVKDLHEKLVEKLGNEEHFQTIEGDLLSLRYMIDDVIQEDG 1711


>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 309 IHNTDH-NQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQTDDSPGDRVVFPGLT 485
           I NTDH +   + ++     E  RT N   + ++KP S   +F +    P   V  P L 
Sbjct: 138 ISNTDHCHANDKEKTWNDQRECIRTGNMLPRPVSKPASAKLQFKRAPRRPSVYVPVPLLQ 197

Query: 486 SRSGVN 503
           + SG N
Sbjct: 198 NSSGTN 203


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 264 QKYLAAEPNRMSERSIHNTDHNQRLQSRSSTKIEEASRTENGTFKILNKPFSIHRRFAQT 443
           ++++  E  RM ER +   +  + ++ R   +IE   R  NG        F+   R   +
Sbjct: 476 EEFVEMERRRMEERIVQQQEELEMMRRRLE-EIEVEFRRSNGGSVDETSGFAKRLRSLYS 534

Query: 444 DDSPG 458
           DD PG
Sbjct: 535 DDDPG 539


>At3g58710.1 68416.m06543 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 272

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 506 IVPEIPESCKKIGICDKIPNYPREQVEKIVAKL 604
           +VPE P SC+   I    P   R  VEK V  +
Sbjct: 21  VVPESPSSCEDSKISKPTPKKSRRNVEKRVVSV 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,814,917
Number of Sequences: 28952
Number of extensions: 373315
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)