BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20946 (753 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 132 2e-31 SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 8e-21 SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08 SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 58 1e-08 SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.8 SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 4.1 SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 4.1 SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014) 29 4.1 SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09) 29 5.4 SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 5.4 SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11) 29 5.4 SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 28 7.1 SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4 SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057) 28 9.4 >SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 833 Score = 132 bits (320), Expect = 2e-31 Identities = 63/80 (78%), Positives = 71/80 (88%) Frame = +3 Query: 3 RAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDS 182 +AGETRFTDTRKDEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDS Sbjct: 49 KAGETRFTDTRKDEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDS 106 Query: 183 PGHVDFSSEVTAALRVTDGA 242 PGHVDFSSEVTAALRVTDGA Sbjct: 107 PGHVDFSSEVTAALRVTDGA 126 Score = 125 bits (301), Expect = 4e-29 Identities = 58/84 (69%), Positives = 66/84 (78%) Frame = +2 Query: 257 CVSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 436 CVSGVCVQTETVLRQAIAERIKP+LFMNKMDR YQTF RIVE++NVIIA Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIA 191 Query: 437 TYNDDGGPMGEVRVDPSKGSVGFG 508 TY+D+ GPMG ++V P KG+V FG Sbjct: 192 TYSDEDGPMGNIQVGPEKGTVAFG 215 Score = 116 bits (280), Expect = 2e-26 Identities = 52/87 (59%), Positives = 63/87 (72%) Frame = +1 Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660 P +G F +GLHGWAFTLKQ SE+Y+ KFKI KLM RLWG+ F N + KKW K++ Sbjct: 207 PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQAT 266 Query: 661 DNKRSFCMYVLDPIYKVFDAIMKFKKE 741 N R F +VLDPI+K+FDAIM FKKE Sbjct: 267 GNVRGFNQFVLDPIFKMFDAIMNFKKE 293 >SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 227 Score = 97.9 bits (233), Expect = 8e-21 Identities = 43/76 (56%), Positives = 53/76 (69%) Frame = +1 Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660 P +G F +GLHGWAFTLKQ SE+Y+ KFKI KLM RLWG+ F N + KKW K++ Sbjct: 34 PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQAT 93 Query: 661 DNKRSFCMYVLDPIYK 708 N R F +VLDPI+K Sbjct: 94 GNVRGFNQFVLDPIFK 109 >SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 809 Score = 57.6 bits (133), Expect = 1e-08 Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 3/80 (3%) Frame = +1 Query: 493 LCWFRAGLHGWAFTLKQFSEMYADKF--KIDLVKLMNRLWGENFFNPQTKKWSKQKD-DD 663 +C+ + H + FTL F+++Y D F ID RLWG+ +F+ +T+K++++ Sbjct: 239 VCFASSSYH-FCFTLLSFAKLYVDSFGGNIDPQDFAQRLWGDMYFSSKTRKFTRKAPLST 297 Query: 664 NKRSFCMYVLDPIYKVFDAI 723 ++RSF ++L+P+YK+F + Sbjct: 298 SQRSFVEFILEPMYKIFGQV 317 Score = 34.3 bits (75), Expect = 0.11 Identities = 17/79 (21%), Positives = 39/79 (49%) Frame = +2 Query: 269 VCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 448 V + TE +L+ A+ E + + +NK+DR Y + +++ VN +++ +++ Sbjct: 166 VMLNTERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSE 225 Query: 449 DGGPMGEVRVDPSKGSVGF 505 ++ + P G+V F Sbjct: 226 GA---DDLVISPLLGNVCF 241 >SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) Length = 563 Score = 57.6 bits (133), Expect = 1e-08 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 5/89 (5%) Frame = +1 Query: 502 FRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKRS-F 678 F + + GW F++K F+ +Y+ K + L LWG+ + + +TK+ K+ NK+ F Sbjct: 224 FSSAIDGWGFSIKDFANLYSKKLGLKAEILQKTLWGDFYLDSKTKRIFKKAQLKNKKPLF 283 Query: 679 CMYVLDPIYKVFDAIM----KFKKEEIDD 753 ++LD I+ ++DA++ K K E+I + Sbjct: 284 VQFILDNIWALYDAVVIRRDKVKSEQISN 312 Score = 46.0 bits (104), Expect = 3e-05 Identities = 25/60 (41%), Positives = 31/60 (51%) Frame = +2 Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 439 V GV QT VLRQA E I+P L +NK+DR + Q+I+E VN I T Sbjct: 111 VEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170 Score = 41.5 bits (93), Expect = 7e-04 Identities = 22/58 (37%), Positives = 30/58 (51%) Frame = +2 Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 433 V GV QT VLRQA E I+P L +NK+DR + Q+I+E V+ + Sbjct: 41 VEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVSTAV 98 >SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) Length = 359 Score = 30.3 bits (65), Expect = 1.8 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +3 Query: 63 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 236 IK A S F E+E + + + + + IN++D+PGH DF+ + L D Sbjct: 48 IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVD 104 >SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 239 Score = 29.5 bits (63), Expect = 3.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = -1 Query: 546 ELFEGESPPMKTSPKPTEPLLGSTRTSP--MGPP 451 ELF PP ++P+PT P ST +P + PP Sbjct: 18 ELFVHLGPPYPSAPRPTSPQCTSTHLTPVHLDPP 51 >SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) Length = 480 Score = 29.1 bits (62), Expect = 4.1 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = -1 Query: 525 PPMKTSPKPT--EPLLGSTRTSPMGPP 451 PPM P P+ +P G++RTS GPP Sbjct: 169 PPMGKPPPPSGNKPTFGNSRTSTNGPP 195 >SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) Length = 392 Score = 29.1 bits (62), Expect = 4.1 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = -1 Query: 525 PPMKTSPKPT--EPLLGSTRTSPMGPP 451 PPM P P+ +P G++RTS GPP Sbjct: 81 PPMGKPPPPSGNKPTFGNSRTSTNGPP 107 >SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014) Length = 267 Score = 29.1 bits (62), Expect = 4.1 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 544 FSEMYADKFKIDLVKLMNRLWGENF 618 FS+MYAD+ D + LWGE F Sbjct: 127 FSDMYADRAVSDEARKNKALWGEGF 151 >SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09) Length = 549 Score = 28.7 bits (61), Expect = 5.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -1 Query: 594 HKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMG 457 +K D +N F +GE + S + PKP PL G + P G Sbjct: 262 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 307 >SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) Length = 300 Score = 28.7 bits (61), Expect = 5.4 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 238 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 116 P R A TCPGE ++L+ + +RWS V+N Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281 >SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11) Length = 632 Score = 28.7 bits (61), Expect = 5.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = -1 Query: 594 HKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMG 457 +K D +N F +GE + S + PKP PL G + P G Sbjct: 388 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 433 >SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) Length = 280 Score = 28.3 bits (60), Expect = 7.1 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 3/147 (2%) Frame = -3 Query: 448 IVICGYNDVNIFYNTLERLV*FFSFKLELKKSTVHFVHEQNRLDALGNSLTQY--CFGLY 275 I++CG D N + LE + TV +QN +A G SL ++ L Sbjct: 68 IIVCG--DFNARMDNLEDFTDLSNSAFSYPFPTVRNSRDQN-FNAYGKSLAEFYNSNNLI 124 Query: 274 XXXXXXXXXXRAPSVTRSAAVT-SEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS 98 +P++ SE+ TC + I KP S FV+ +KS Sbjct: 125 VLNGVKQGCMLSPTLLNLYVHDLSEQLDTCSTDDINTNGKPLSCLLYADDFVIFSKS-KK 183 Query: 97 SSKNIEMAVDLMVMQRSCSSLRVSVKR 17 SK I ++ S + L+V++K+ Sbjct: 184 DSKTISTRSNIFA---SKTGLKVNIKK 207 >SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 479 Score = 27.9 bits (59), Expect = 9.4 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -1 Query: 480 STRTSPMGPPSSLYVAIMTLTFSTIRWNV 394 +T T P PP+SLY + + T+ W+V Sbjct: 262 NTCTGPPSPPTSLYKPFLNSSAITLSWSV 290 >SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057) Length = 1124 Score = 27.9 bits (59), Expect = 9.4 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = -1 Query: 600 PVHKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMGPPSSLYVAIMT 424 P + + + LE+ CI L + + + S K P + S + G P+ LY MT Sbjct: 972 PTYTITNLELEYACISSEYLAQSYTGGARDSEKFVNPSITSININVDGMPNRLYSKGMT 1030 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,320,059 Number of Sequences: 59808 Number of extensions: 470973 Number of successful extensions: 1492 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1303 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1488 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2046258890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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