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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20946
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   132   2e-31
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   8e-21
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              58   1e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.8  
SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   4.1  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   4.1  
SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)        29   4.1  
SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09)         29   5.4  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   5.4  
SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11)         29   5.4  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  28   7.1  
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)           28   9.4  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  132 bits (320), Expect = 2e-31
 Identities = 63/80 (78%), Positives = 71/80 (88%)
 Frame = +3

Query: 3   RAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDS 182
           +AGETRFTDTRKDEQDRCITIKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDS
Sbjct: 49  KAGETRFTDTRKDEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDS 106

Query: 183 PGHVDFSSEVTAALRVTDGA 242
           PGHVDFSSEVTAALRVTDGA
Sbjct: 107 PGHVDFSSEVTAALRVTDGA 126



 Score =  125 bits (301), Expect = 4e-29
 Identities = 58/84 (69%), Positives = 66/84 (78%)
 Frame = +2

Query: 257 CVSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 436
           CVSGVCVQTETVLRQAIAERIKP+LFMNKMDR            YQTF RIVE++NVIIA
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIA 191

Query: 437 TYNDDGGPMGEVRVDPSKGSVGFG 508
           TY+D+ GPMG ++V P KG+V FG
Sbjct: 192 TYSDEDGPMGNIQVGPEKGTVAFG 215



 Score =  116 bits (280), Expect = 2e-26
 Identities = 52/87 (59%), Positives = 63/87 (72%)
 Frame = +1

Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660
           P +G   F +GLHGWAFTLKQ SE+Y+ KFKI   KLM RLWG+ F N + KKW K++  
Sbjct: 207 PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQAT 266

Query: 661 DNKRSFCMYVLDPIYKVFDAIMKFKKE 741
            N R F  +VLDPI+K+FDAIM FKKE
Sbjct: 267 GNVRGFNQFVLDPIFKMFDAIMNFKKE 293


>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 43/76 (56%), Positives = 53/76 (69%)
 Frame = +1

Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660
           P +G   F +GLHGWAFTLKQ SE+Y+ KFKI   KLM RLWG+ F N + KKW K++  
Sbjct: 34  PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQAT 93

Query: 661 DNKRSFCMYVLDPIYK 708
            N R F  +VLDPI+K
Sbjct: 94  GNVRGFNQFVLDPIFK 109


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
 Frame = +1

Query: 493 LCWFRAGLHGWAFTLKQFSEMYADKF--KIDLVKLMNRLWGENFFNPQTKKWSKQKD-DD 663
           +C+  +  H + FTL  F+++Y D F   ID      RLWG+ +F+ +T+K++++     
Sbjct: 239 VCFASSSYH-FCFTLLSFAKLYVDSFGGNIDPQDFAQRLWGDMYFSSKTRKFTRKAPLST 297

Query: 664 NKRSFCMYVLDPIYKVFDAI 723
           ++RSF  ++L+P+YK+F  +
Sbjct: 298 SQRSFVEFILEPMYKIFGQV 317



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 17/79 (21%), Positives = 39/79 (49%)
 Frame = +2

Query: 269 VCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 448
           V + TE +L+ A+ E +   + +NK+DR            Y   + +++ VN +++ +++
Sbjct: 166 VMLNTERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSE 225

Query: 449 DGGPMGEVRVDPSKGSVGF 505
                 ++ + P  G+V F
Sbjct: 226 GA---DDLVISPLLGNVCF 241


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
 Frame = +1

Query: 502 FRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKRS-F 678
           F + + GW F++K F+ +Y+ K  +    L   LWG+ + + +TK+  K+    NK+  F
Sbjct: 224 FSSAIDGWGFSIKDFANLYSKKLGLKAEILQKTLWGDFYLDSKTKRIFKKAQLKNKKPLF 283

Query: 679 CMYVLDPIYKVFDAIM----KFKKEEIDD 753
             ++LD I+ ++DA++    K K E+I +
Sbjct: 284 VQFILDNIWALYDAVVIRRDKVKSEQISN 312



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/60 (41%), Positives = 31/60 (51%)
 Frame = +2

Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 439
           V GV  QT  VLRQA  E I+P L +NK+DR            +   Q+I+E VN I  T
Sbjct: 111 VEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +2

Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 433
           V GV  QT  VLRQA  E I+P L +NK+DR            +   Q+I+E V+  +
Sbjct: 41  VEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVSTAV 98


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 63  IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 236
           IK  A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D
Sbjct: 48  IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVD 104


>SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 546 ELFEGESPPMKTSPKPTEPLLGSTRTSP--MGPP 451
           ELF    PP  ++P+PT P   ST  +P  + PP
Sbjct: 18  ELFVHLGPPYPSAPRPTSPQCTSTHLTPVHLDPP 51


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 525 PPMKTSPKPT--EPLLGSTRTSPMGPP 451
           PPM   P P+  +P  G++RTS  GPP
Sbjct: 169 PPMGKPPPPSGNKPTFGNSRTSTNGPP 195


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 525 PPMKTSPKPT--EPLLGSTRTSPMGPP 451
           PPM   P P+  +P  G++RTS  GPP
Sbjct: 81  PPMGKPPPPSGNKPTFGNSRTSTNGPP 107


>SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)
          Length = 267

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 544 FSEMYADKFKIDLVKLMNRLWGENF 618
           FS+MYAD+   D  +    LWGE F
Sbjct: 127 FSDMYADRAVSDEARKNKALWGEGF 151


>SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09)
          Length = 549

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 594 HKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMG 457
           +K D +N  F    +GE  +  S   +  PKP  PL G  +  P G
Sbjct: 262 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 307


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 238 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 116
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11)
          Length = 632

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 594 HKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMG 457
           +K D +N  F    +GE  +  S   +  PKP  PL G  +  P G
Sbjct: 388 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 433


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 3/147 (2%)
 Frame = -3

Query: 448 IVICGYNDVNIFYNTLERLV*FFSFKLELKKSTVHFVHEQNRLDALGNSLTQY--CFGLY 275
           I++CG  D N   + LE      +        TV    +QN  +A G SL ++     L 
Sbjct: 68  IIVCG--DFNARMDNLEDFTDLSNSAFSYPFPTVRNSRDQN-FNAYGKSLAEFYNSNNLI 124

Query: 274 XXXXXXXXXXRAPSVTRSAAVT-SEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS 98
                      +P++        SE+  TC  + I    KP S       FV+ +KS   
Sbjct: 125 VLNGVKQGCMLSPTLLNLYVHDLSEQLDTCSTDDINTNGKPLSCLLYADDFVIFSKS-KK 183

Query: 97  SSKNIEMAVDLMVMQRSCSSLRVSVKR 17
            SK I    ++     S + L+V++K+
Sbjct: 184 DSKTISTRSNIFA---SKTGLKVNIKK 207


>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 480 STRTSPMGPPSSLYVAIMTLTFSTIRWNV 394
           +T T P  PP+SLY   +  +  T+ W+V
Sbjct: 262 NTCTGPPSPPTSLYKPFLNSSAITLSWSV 290


>SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)
          Length = 1124

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -1

Query: 600  PVHKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMGPPSSLYVAIMT 424
            P + +  + LE+ CI    L +  +   + S K   P + S   +  G P+ LY   MT
Sbjct: 972  PTYTITNLELEYACISSEYLAQSYTGGARDSEKFVNPSITSININVDGMPNRLYSKGMT 1030


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,320,059
Number of Sequences: 59808
Number of extensions: 470973
Number of successful extensions: 1492
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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