Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20946
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 132 2e-31
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 98 8e-21
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 58 1e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.8
SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 4.1
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 4.1
SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014) 29 4.1
SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09) 29 5.4
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 5.4
SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11) 29 5.4
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 28 7.1
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057) 28 9.4
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 132 bits (320), Expect = 2e-31
Identities = 63/80 (78%), Positives = 71/80 (88%)
Frame = +3
Query: 3 RAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDS 182
+AGETRFTDTRKDEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDS
Sbjct: 49 KAGETRFTDTRKDEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDS 106
Query: 183 PGHVDFSSEVTAALRVTDGA 242
PGHVDFSSEVTAALRVTDGA
Sbjct: 107 PGHVDFSSEVTAALRVTDGA 126
Score = 125 bits (301), Expect = 4e-29
Identities = 58/84 (69%), Positives = 66/84 (78%)
Frame = +2
Query: 257 CVSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 436
CVSGVCVQTETVLRQAIAERIKP+LFMNKMDR YQTF RIVE++NVIIA
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIA 191
Query: 437 TYNDDGGPMGEVRVDPSKGSVGFG 508
TY+D+ GPMG ++V P KG+V FG
Sbjct: 192 TYSDEDGPMGNIQVGPEKGTVAFG 215
Score = 116 bits (280), Expect = 2e-26
Identities = 52/87 (59%), Positives = 63/87 (72%)
Frame = +1
Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660
P +G F +GLHGWAFTLKQ SE+Y+ KFKI KLM RLWG+ F N + KKW K++
Sbjct: 207 PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQAT 266
Query: 661 DNKRSFCMYVLDPIYKVFDAIMKFKKE 741
N R F +VLDPI+K+FDAIM FKKE
Sbjct: 267 GNVRGFNQFVLDPIFKMFDAIMNFKKE 293
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 97.9 bits (233), Expect = 8e-21
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = +1
Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660
P +G F +GLHGWAFTLKQ SE+Y+ KFKI KLM RLWG+ F N + KKW K++
Sbjct: 34 PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKLMKRLWGDQFINAEDKKWKKEQAT 93
Query: 661 DNKRSFCMYVLDPIYK 708
N R F +VLDPI+K
Sbjct: 94 GNVRGFNQFVLDPIFK 109
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 57.6 bits (133), Expect = 1e-08
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +1
Query: 493 LCWFRAGLHGWAFTLKQFSEMYADKF--KIDLVKLMNRLWGENFFNPQTKKWSKQKD-DD 663
+C+ + H + FTL F+++Y D F ID RLWG+ +F+ +T+K++++
Sbjct: 239 VCFASSSYH-FCFTLLSFAKLYVDSFGGNIDPQDFAQRLWGDMYFSSKTRKFTRKAPLST 297
Query: 664 NKRSFCMYVLDPIYKVFDAI 723
++RSF ++L+P+YK+F +
Sbjct: 298 SQRSFVEFILEPMYKIFGQV 317
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/79 (21%), Positives = 39/79 (49%)
Frame = +2
Query: 269 VCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYND 448
V + TE +L+ A+ E + + +NK+DR Y + +++ VN +++ +++
Sbjct: 166 VMLNTERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSE 225
Query: 449 DGGPMGEVRVDPSKGSVGF 505
++ + P G+V F
Sbjct: 226 GA---DDLVISPLLGNVCF 241
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +1
Query: 502 FRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKRS-F 678
F + + GW F++K F+ +Y+ K + L LWG+ + + +TK+ K+ NK+ F
Sbjct: 224 FSSAIDGWGFSIKDFANLYSKKLGLKAEILQKTLWGDFYLDSKTKRIFKKAQLKNKKPLF 283
Query: 679 CMYVLDPIYKVFDAIM----KFKKEEIDD 753
++LD I+ ++DA++ K K E+I +
Sbjct: 284 VQFILDNIWALYDAVVIRRDKVKSEQISN 312
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = +2
Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 439
V GV QT VLRQA E I+P L +NK+DR + Q+I+E VN I T
Sbjct: 111 VEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +2
Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVII 433
V GV QT VLRQA E I+P L +NK+DR + Q+I+E V+ +
Sbjct: 41 VEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVSTAV 98
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 63 IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 236
IK A S F E+E + + + + + IN++D+PGH DF+ + L D
Sbjct: 48 IKKGATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVD 104
>SB_23492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 546 ELFEGESPPMKTSPKPTEPLLGSTRTSP--MGPP 451
ELF PP ++P+PT P ST +P + PP
Sbjct: 18 ELFVHLGPPYPSAPRPTSPQCTSTHLTPVHLDPP 51
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 525 PPMKTSPKPT--EPLLGSTRTSPMGPP 451
PPM P P+ +P G++RTS GPP
Sbjct: 169 PPMGKPPPPSGNKPTFGNSRTSTNGPP 195
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 525 PPMKTSPKPT--EPLLGSTRTSPMGPP 451
PPM P P+ +P G++RTS GPP
Sbjct: 81 PPMGKPPPPSGNKPTFGNSRTSTNGPP 107
>SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)
Length = 267
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 544 FSEMYADKFKIDLVKLMNRLWGENF 618
FS+MYAD+ D + LWGE F
Sbjct: 127 FSDMYADRAVSDEARKNKALWGEGF 151
>SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09)
Length = 549
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 594 HKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMG 457
+K D +N F +GE + S + PKP PL G + P G
Sbjct: 262 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 307
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 238 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 116
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11)
Length = 632
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 594 HKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMG 457
+K D +N F +GE + S + PKP PL G + P G
Sbjct: 388 YKSDSLNKSFFAAPIGESKDFASYKRRGKPKPQVPLRGPEQYQPDG 433
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 28.3 bits (60), Expect = 7.1
Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 3/147 (2%)
Frame = -3
Query: 448 IVICGYNDVNIFYNTLERLV*FFSFKLELKKSTVHFVHEQNRLDALGNSLTQY--CFGLY 275
I++CG D N + LE + TV +QN +A G SL ++ L
Sbjct: 68 IIVCG--DFNARMDNLEDFTDLSNSAFSYPFPTVRNSRDQN-FNAYGKSLAEFYNSNNLI 124
Query: 274 XXXXXXXXXXRAPSVTRSAAVT-SEEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS 98
+P++ SE+ TC + I KP S FV+ +KS
Sbjct: 125 VLNGVKQGCMLSPTLLNLYVHDLSEQLDTCSTDDINTNGKPLSCLLYADDFVIFSKS-KK 183
Query: 97 SSKNIEMAVDLMVMQRSCSSLRVSVKR 17
SK I ++ S + L+V++K+
Sbjct: 184 DSKTISTRSNIFA---SKTGLKVNIKK 207
>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 480 STRTSPMGPPSSLYVAIMTLTFSTIRWNV 394
+T T P PP+SLY + + T+ W+V
Sbjct: 262 NTCTGPPSPPTSLYKPFLNSSAITLSWSV 290
>SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)
Length = 1124
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -1
Query: 600 PVHKLDKVNLEFVCIHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMGPPSSLYVAIMT 424
P + + + LE+ CI L + + + S K P + S + G P+ LY MT
Sbjct: 972 PTYTITNLELEYACISSEYLAQSYTGGARDSEKFVNPSITSININVDGMPNRLYSKGMT 1030
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,320,059
Number of Sequences: 59808
Number of extensions: 470973
Number of successful extensions: 1492
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -