Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20946
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 131 4e-31
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 131 4e-31
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 53 2e-07
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 53 2e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 42 4e-04
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 2.0
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 30 2.0
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 30 2.0
AL132848-2|CAB60385.2| 333|Caenorhabditis elegans Hypothetical ... 29 2.7
U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical pr... 28 6.2
U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical p... 28 6.2
AL034365-2|CAA22257.1| 366|Caenorhabditis elegans Hypothetical ... 28 6.2
AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical ... 28 6.2
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 28 8.2
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 131 bits (317), Expect = 4e-31
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = +2
Query: 257 CVSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 436
CVSGVCVQTETVLRQAIAERIKP+LFMNKMDR +QTFQRIVEN+NVIIA
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIA 202
Query: 437 TYNDDGGPMGEVRVDPSKGSVGFG 508
TY DD GPMG + VDPS G+VGFG
Sbjct: 203 TYGDDDGPMGPIMVDPSIGNVGFG 226
Score = 130 bits (313), Expect = 1e-30
Identities = 68/88 (77%), Positives = 74/88 (84%), Gaps = 8/88 (9%)
Frame = +3
Query: 3 RAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--G 158
+AGETRFTDTRKDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK G
Sbjct: 50 KAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNG 109
Query: 159 FLINLIDSPGHVDFSSEVTAALRVTDGA 242
FLINLIDSPGHVDFSSEVTAALRVTDGA
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGA 137
Score = 120 bits (288), Expect = 1e-27
Identities = 49/81 (60%), Positives = 64/81 (79%)
Frame = +1
Query: 502 FRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKRSFC 681
F +GLHGWAFTLKQF+EMYA KF + + KLM LWG+ FF+ +TKKWS + D++KR FC
Sbjct: 225 FGSGLHGWAFTLKQFAEMYAGKFGVQVDKLMKNLWGDRFFDLKTKKWSSTQTDESKRGFC 284
Query: 682 MYVLDPIYKVFDAIMKFKKEE 744
+VLDPI+ VFDA+M KK++
Sbjct: 285 QFVLDPIFMVFDAVMNIKKDK 305
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 131 bits (317), Expect = 4e-31
Identities = 62/84 (73%), Positives = 67/84 (79%)
Frame = +2
Query: 257 CVSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 436
CVSGVCVQTETVLRQAIAERIKP+LFMNKMDR +QTFQRIVEN+NVIIA
Sbjct: 143 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINVIIA 202
Query: 437 TYNDDGGPMGEVRVDPSKGSVGFG 508
TY DD GPMG + VDPS G+VGFG
Sbjct: 203 TYGDDDGPMGPIMVDPSIGNVGFG 226
Score = 127 bits (306), Expect = 1e-29
Identities = 67/88 (76%), Positives = 73/88 (82%), Gaps = 8/88 (9%)
Frame = +3
Query: 3 RAGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--G 158
+AGETRFTDTRKDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK G
Sbjct: 50 KAGETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNG 109
Query: 159 FLINLIDSPGHVDFSSEVTAALRVTDGA 242
FLINLIDSPGHVDFSSEVTAAL VTDGA
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGA 137
Score = 120 bits (288), Expect = 1e-27
Identities = 49/81 (60%), Positives = 64/81 (79%)
Frame = +1
Query: 502 FRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKRSFC 681
F +GLHGWAFTLKQF+EMYA KF + + KLM LWG+ FF+ +TKKWS + D++KR FC
Sbjct: 225 FGSGLHGWAFTLKQFAEMYAGKFGVQVDKLMKNLWGDRFFDLKTKKWSSTQTDESKRGFC 284
Query: 682 MYVLDPIYKVFDAIMKFKKEE 744
+VLDPI+ VFDA+M KK++
Sbjct: 285 QFVLDPIFMVFDAVMNIKKDK 305
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/77 (46%), Positives = 46/77 (59%)
Frame = +3
Query: 6 AGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSP 185
AG+ R+ D+R+DEQ R IT+KS+ IS+ E LINLIDSP
Sbjct: 52 AGKLRYMDSREDEQTRGITMKSSGISLLCE--------------------PLLINLIDSP 91
Query: 186 GHVDFSSEVTAALRVTD 236
GHVDFS EVT+AL ++D
Sbjct: 92 GHVDFSGEVTSALILSD 108
Score = 44.4 bits (100), Expect = 9e-05
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Frame = +2
Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 439
+ G+C QTE ++RQ I IL +NK+DR YQ R++E VN I+
Sbjct: 117 IEGICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQ 176
Query: 440 Y-------NDDGGPMGE----VRVDPSKGSVGF 505
+D G + E + DP+KG+V F
Sbjct: 177 VLGGIVLEDDTWGNIEESEAKLHFDPAKGNVIF 209
Score = 36.7 bits (81), Expect = 0.018
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660
P +G F + LH +AF + F+++ A+K K++ L+ ++G+ F+ T
Sbjct: 202 PAKGNVIFSSALHSYAFGCEDFAQIAAEKMKVEKSALLPAMFGD-FWIDSTGSIRDGAAV 260
Query: 661 DNKRS-FCMYVLDPIYKVFD 717
NK + F VL+P++++ D
Sbjct: 261 KNKATLFERIVLEPLWRIHD 280
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/77 (46%), Positives = 46/77 (59%)
Frame = +3
Query: 6 AGETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSP 185
AG+ R+ D+R+DEQ R IT+KS+ IS+ E LINLIDSP
Sbjct: 52 AGKLRYMDSREDEQTRGITMKSSGISLLCE--------------------PLLINLIDSP 91
Query: 186 GHVDFSSEVTAALRVTD 236
GHVDFS EVT+AL ++D
Sbjct: 92 GHVDFSGEVTSALILSD 108
Score = 44.4 bits (100), Expect = 9e-05
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Frame = +2
Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 439
+ G+C QTE ++RQ I IL +NK+DR YQ R++E VN I+
Sbjct: 117 IEGICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCISQ 176
Query: 440 Y-------NDDGGPMGE----VRVDPSKGSVGF 505
+D G + E + DP+KG+V F
Sbjct: 177 VLGGIVLEDDTWGNIEESEAKLHFDPAKGNVIF 209
Score = 36.7 bits (81), Expect = 0.018
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDD 660
P +G F + LH +AF + F+++ A+K K++ L+ ++G+ F+ T
Sbjct: 202 PAKGNVIFSSALHSYAFGCEDFAQIAAEKMKVEKSALLPAMFGD-FWIDSTGSIRDGAAV 260
Query: 661 DNKRS-FCMYVLDPIYKVFD 717
NK + F VL+P++++ D
Sbjct: 261 KNKATLFERIVLEPLWRIHD 280
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +1
Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKF--KIDLVKLMNRLWGENFFNPQTKKWSKQK 654
P G F +G + F+L FS +YA + + + RLWG+ +F +T+K+ K+
Sbjct: 305 PLNGNVIFSSGRYNVCFSLLSFSNIYAKQHGDSFNSKEFARRLWGDIYFEKKTRKFVKKS 364
Query: 655 DD-DNKRSFCMYVLDPIYKVFDAIM 726
D R+F ++L+P+YK+F ++
Sbjct: 365 PSHDAPRTFVQFILEPMYKIFSQVV 389
Score = 48.8 bits (111), Expect = 4e-06
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +3
Query: 12 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGH 191
+ RFTD E+ R +IKS +S I D R KS +L+N+ID+PGH
Sbjct: 167 DARFTDILFIEKQRGCSIKSQPVS------------IVAQDSRSKS---YLLNIIDTPGH 211
Query: 192 VDFSSEVTAALRVTDG 239
V+FS E+TA+ R+ DG
Sbjct: 212 VNFSDEMTASYRLADG 227
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +2
Query: 266 GVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYN 445
GV + TE +R AI ER+ L ++K+DR Y + I++ VN I++T+
Sbjct: 237 GVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFA 296
Query: 446 DDGGPMGEVRVDPSKGSVGF 505
++ P+ + P G+V F
Sbjct: 297 EEDVPV----LSPLNGNVIF 312
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +1
Query: 481 P*QGLCWFRAGLHGWAFTLKQFSEMYADKF--KIDLVKLMNRLWGENFFNPQTKKWSKQK 654
P G F +G + F+L FS +YA + + + RLWG+ +F +T+K+ K+
Sbjct: 180 PLNGNVIFSSGRYNVCFSLLSFSNIYAKQHGDSFNSKEFARRLWGDIYFEKKTRKFVKKS 239
Query: 655 DD-DNKRSFCMYVLDPIYKVFDAIM 726
D R+F ++L+P+YK+F ++
Sbjct: 240 PSHDAPRTFVQFILEPMYKIFSQVV 264
Score = 48.8 bits (111), Expect = 4e-06
Identities = 31/76 (40%), Positives = 43/76 (56%)
Frame = +3
Query: 12 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGH 191
+ RFTD E+ R +IKS +S I D R KS +L+N+ID+PGH
Sbjct: 42 DARFTDILFIEKQRGCSIKSQPVS------------IVAQDSRSKS---YLLNIIDTPGH 86
Query: 192 VDFSSEVTAALRVTDG 239
V+FS E+TA+ R+ DG
Sbjct: 87 VNFSDEMTASYRLADG 102
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +2
Query: 266 GVCVQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIATYN 445
GV + TE +R AI ER+ L ++K+DR Y + I++ VN I++T+
Sbjct: 112 GVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNNILSTFA 171
Query: 446 DDGGPMGEVRVDPSKGSVGF 505
++ P+ + P G+V F
Sbjct: 172 EEDVPV----LSPLNGNVIF 187
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +3
Query: 153 KGFLINLIDSPGHVDFSSEVTAALRVTDG 239
+G+L+NLID+PGHVDFS+EV+ +L V DG
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDG 128
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +3
Query: 156 GFLINLIDSPGHVDFSSEVTAALRVTDGA 242
G IN+ID+PGHVDF+ EV ALRV DGA
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGA 139
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 260 VSGVCVQTETVLRQAIAERIKPILFMNKMDR 352
V GV QT TV RQ + I F+NKMDR
Sbjct: 146 VGGVQSQTFTVNRQLARYNVPFICFVNKMDR 176
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +3
Query: 153 KGFLINLIDSPGHVDFSSEVTAALRVTDG 239
KG INLID+PGHVDF EV +RV DG
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDG 116
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 558 IHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMGPPSSLYVAIMTLTFSTI 406
+ L +L E + +T+P EP+L P PP +L MT STI
Sbjct: 459 LDLSQLLEKHNSSSQTTPPVVEPVLAEVSAEPQRPPVTL---SMTAPVSTI 506
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 558 IHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMGPPSSLYVAIMTLTFSTI 406
+ L +L E + +T+P EP+L P PP +L MT STI
Sbjct: 457 LDLSQLLEKHNSSSQTTPPVVEPVLAEVSAEPQRPPVTL---SMTAPVSTI 504
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 178 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 53
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 558 IHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMGPPSSLYVAIMTLTFSTI 406
+ L +L E + +T+P EP+L P PP +L MT STI
Sbjct: 459 LDLSQLLEKHNSSSQTTPPVVEPVLAEVSAEPQRPPVTL---SMTAPVSTI 506
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 558 IHLGELFEGESPPMKTSPKPTEPLLGSTRTSPMGPPSSLYVAIMTLTFSTI 406
+ L +L E + +T+P EP+L P PP +L MT STI
Sbjct: 457 LDLSQLLEKHNSSSQTTPPVVEPVLAEVSAEPQRPPVTL---SMTAPVSTI 504
>AL132848-2|CAB60385.2| 333|Caenorhabditis elegans Hypothetical
protein Y47H10A.3 protein.
Length = 333
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +1
Query: 544 FSEMYADKFKIDLVKLMNRLWGENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAI 723
FS Y K K D + + Q KW + ++N RSF V D + D+
Sbjct: 241 FSVYYVQKLKRDRIPSTAAVRARRERMDQVPKWRPSEGEENVRSFLNLVKDQMKNDEDSF 300
Query: 724 MKFKKEEID 750
+ F K E D
Sbjct: 301 I-FSKSEDD 308
>U70855-5|AAB09160.2| 886|Caenorhabditis elegans Hypothetical
protein K08F11.2 protein.
Length = 886
Score = 28.3 bits (60), Expect = 6.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +1
Query: 604 WGENFFNPQTKKWSKQKDDDNKRS 675
W N N + ++W K ++D+N +
Sbjct: 10 WSSNLLNARKRRWKKDEEDENSNT 33
>U55857-10|AAA98035.2| 895|Caenorhabditis elegans Hypothetical
protein K08D10.1 protein.
Length = 895
Score = 28.3 bits (60), Expect = 6.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +1
Query: 604 WGENFFNPQTKKWSKQKDDDNKRS 675
W N N + ++W K ++D+N +
Sbjct: 10 WSSNLLNARKRRWKKDEEDENSNT 33
>AL034365-2|CAA22257.1| 366|Caenorhabditis elegans Hypothetical
protein Y69E1A.2 protein.
Length = 366
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 302 PDAVLFRFVHTHQTHSNNHKGSIS 231
P+A F H H NNHKG IS
Sbjct: 285 PEAAKFGDKEWHPVHVNNHKGDIS 308
>AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical
protein Y20F4.5 protein.
Length = 725
Score = 28.3 bits (60), Expect = 6.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +1
Query: 604 WGENFFNPQTKKWSKQKDDDNKRS 675
W N N + ++W K ++D+N +
Sbjct: 10 WSSNLLNARKRRWKKDEEDENSNT 33
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 1 REPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQTLTS 138
+EPE+P++ R+ + PL RPS+ S + T TS
Sbjct: 287 KEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVHTSTS 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,230,300
Number of Sequences: 27780
Number of extensions: 365062
Number of successful extensions: 1278
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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