Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20945
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    73   4e-14
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    71   2e-13
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    70   3e-13
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    46   4e-06
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    44   2e-05
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    40   4e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    36   0.006
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    31   0.12 
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    30   0.38 
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    25   8.1  

>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 10/122 (8%)
 Frame = +2

Query: 137 IFYRYLALCNGVLG--PLRFVFRRYRADTE*FRQISYKFRRIWIIEFFAPWCGHCKSLVP 310
           +F    +L +GV G  P+ F       +++ FR+   K +   ++ F+APWCG+CK LVP
Sbjct: 11  LFLACFSLVSGVFGYSPM-FGSNTIELNSKNFRKF-VKAKGPSLVVFYAPWCGYCKKLVP 68

Query: 311 EYKKAARALKGIVKVGAL--DADEHRSVSQKYGVTGFPTIK-IFTGSK-----HTPYQGQ 466
            Y+K A  L  ++ V A+  DAD++R+V  +Y V GFPTIK ++  SK      T Y G 
Sbjct: 69  TYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGD 128

Query: 467 RT 472
           R+
Sbjct: 129 RS 130



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +3

Query: 642 YAPWCGHCKNLEPHWAKAATEL 707
           YAPWCG+CK L P + K A+ L
Sbjct: 56  YAPWCGYCKKLVPTYQKLASNL 77


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
 Frame = +2

Query: 260 IIEFFAPWCGHCKSLVPEYKKAARALK--GIVKVGALDADEHRSVSQKYGVTGFPTIKIF 433
           +IEF+A WCGHCKSL P Y++     +    V +G +DAD H  V+ KY +TGFPT+  F
Sbjct: 43  LIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWF 102

Query: 434 --TGSKHTPYQGQRTAEGFVE 490
              GS+   Y   R  +   +
Sbjct: 103 PPDGSEPVQYSNARDVDSLTQ 123



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
 Frame = +2

Query: 260 IIEFFAPWCGHCKSLVPEYKKAARALKG--IVKVGALDADEHRSVSQKYGVTGFPTIKIF 433
           ++EF+A WCG+CK L P Y+   +  K    V++  ++AD    + + + V  FPTIK F
Sbjct: 162 LVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFF 221

Query: 434 -TGSKHTP--YQGQRTAEGFVE 490
               K  P  Y+G R+ E  +E
Sbjct: 222 PKDDKDKPELYEGDRSLESLIE 243



 Score = 31.9 bits (69), Expect = 0.094
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 642 YAPWCGHCKNLEP 680
           YA WCGHCK+L P
Sbjct: 47  YATWCGHCKSLAP 59



 Score = 29.1 bits (62), Expect = 0.66
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 642 YAPWCGHCKNLEP 680
           YA WCG+CK L P
Sbjct: 166 YADWCGYCKRLAP 178


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +2

Query: 251 RIWIIEFFAPWCGHCKSLVPEYKKAARAL-KGIVKVGALDADEHRSVSQKYGVTGFPTIK 427
           ++ +++F+APWCGHCK+L PEY+ AA  L K  + +  +D  E   +  +Y + G+PT+ 
Sbjct: 40  KVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLN 99

Query: 428 IF-TGSKHTPYQGQRTAEGFVE 490
           +F  G + + Y G R  +  V+
Sbjct: 100 VFKNGKQISQYSGPRKHDALVK 121



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
 Frame = +2

Query: 260 IIEFFAPWCGHCKSLVPEYKKAARALK--GIVKVGALDADEHRSVSQKYGVTGFPTIKIF 433
           ++EF+APWCGHCK+L P Y+K A        V V  +DA E+  +S    ++GFPTI  F
Sbjct: 377 LVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATEN-DIS--VSISGFPTIMFF 433

Query: 434 -TGSKHTP--YQGQRTAE 478
               K  P  Y+G RT E
Sbjct: 434 KANDKVNPVRYEGDRTLE 451



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 642 YAPWCGHCKNLEPHWAKAATELKR 713
           YAPWCGHCK L P +  AA EL++
Sbjct: 47  YAPWCGHCKALAPEYESAADELEK 70



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +3

Query: 642 YAPWCGHCKNLEPHWAKAATE 704
           YAPWCGHCKNL P + K A E
Sbjct: 381 YAPWCGHCKNLAPTYEKLAEE 401


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 20/61 (32%), Positives = 37/61 (60%)
 Frame = +2

Query: 251 RIWIIEFFAPWCGHCKSLVPEYKKAARALKGIVKVGALDADEHRSVSQKYGVTGFPTIKI 430
           ++ +++F+A WCG CK L P  +K +   +    + A++AD+   ++QK GV   PT+ +
Sbjct: 36  KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFI-AVNADKFSDIAQKNGVYALPTMVL 94

Query: 431 F 433
           F
Sbjct: 95  F 95



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 642 YAPWCGHCKNLEPHWAKAATE 704
           YA WCG CK L+P   K + +
Sbjct: 43  YADWCGPCKYLKPFLEKLSEQ 63


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
 Frame = +2

Query: 209 ADTE*FRQISYKFRRIWIIEFFAPWCGHCKSLVPEYKKAARALKGIVKVGALDADEHRSV 388
           +D+  F+ I  + + + +++FFA WCG CK++ P++++ +        +  +D D+   +
Sbjct: 6   SDSSEFKSIVCQDKLV-VVDFFATWCGPCKAIAPKFEQFSNTYSDATFI-KVDVDQLSEI 63

Query: 389 SQKYGVTGFPTIKIF-TGSKHTPYQGQRTAEGFVEAALNA 505
           + + GV   P+  ++  G K     G   A+  +EA++ A
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVGANPAK--LEASIKA 101


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 263 IEFFAPWCGHCKSLVPEYKKAARALKGIVKVGA-LDADEHRSVSQKYGVTGFPTIKIFTG 439
           ++ +A WCG CK++ P + + A        V A ++ DE R ++   GV   PT   F  
Sbjct: 24  VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFEN 83

Query: 440 SK 445
            K
Sbjct: 84  GK 85



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 642 YAPWCGHCKNLEPHWAKAATE 704
           YA WCG CK + P +++ A++
Sbjct: 27  YADWCGPCKAISPLFSQLASK 47


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 15/65 (23%), Positives = 34/65 (52%)
 Frame = +2

Query: 251 RIWIIEFFAPWCGHCKSLVPEYKKAARALKGIVKVGALDADEHRSVSQKYGVTGFPTIKI 430
           +I ++ F+APW   CK +   + + A+  K  V +  ++A++   +++ + V   P   +
Sbjct: 21  QIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFL-KIEAEKFSDIAESFDVNAVPLFVL 79

Query: 431 FTGSK 445
             G+K
Sbjct: 80  IHGAK 84


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
 Frame = +2

Query: 257 WIIEFFAPWCGHCKSLVPEYKKAARALKGIVKVGAL---DADEHRSVSQKYGVTGFPTIK 427
           W I+++ P CG CK L P +       K  V+       + D  + +S    +   PT+ 
Sbjct: 45  WFIKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLY 104

Query: 428 IFTGS---KHTPYQGQRTAEG----FVEAALN 502
           ++      +  P+ G  T+E     FVE  LN
Sbjct: 105 LYQNGEIVEEVPF-GASTSEASLLDFVETHLN 135



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 642 YAPWCGHCKNLEPHWAKAATELK 710
           Y P CG CK L P W     + K
Sbjct: 50  YLPSCGACKRLGPMWDNMVEKAK 72


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 16/82 (19%), Positives = 32/82 (39%)
 Frame = +2

Query: 284 CGHCKSLVPEYKKAARALKGIVKVGALDADEHRSVSQKYGVTGFPTIKIFTGSKHTPYQG 463
           C  C      +    R     +K+  ++ DE + +   + +  FPT ++F G     Y G
Sbjct: 209 CEDCFHWEAVWSSITRNTDERLKMAQVNCDEEKEMCNHFHIKKFPTFRVFQGFDSIQYNG 268

Query: 464 QRTAEGFVEAALNAARRRHMKI 529
               +  +  +   A  + +KI
Sbjct: 269 PLKYQQLLSYSNQVASYQAIKI 290


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 290 HCKSLVPEYKKAARALKGIVKVGALDADEHRSVSQKYGV-TGFPTIKIFTG 439
           HC        KAAR L  I++    ++ E  S+SQK  +    PT+ I  G
Sbjct: 69  HCTYSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHG 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,958
Number of Sequences: 5004
Number of extensions: 59011
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)