Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20944
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    25   0.86 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.5  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    23   3.5  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    23   3.5  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    23   3.5  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    23   3.5  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    23   3.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.0  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 290 TVNNVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATG 406
           TV+ V SN  G + IR+K+  G  +    +LYA + A G
Sbjct: 273 TVSQV-SNWFGNKRIRYKKNIGKAQEE-ANLYAAKKAAG 309


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 710 QSFVVLRIWPPQCQCLS 660
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 710 QSFVVLRIWPPQCQCLS 660
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 710 QSFVVLRIWPPQCQCLS 660
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 710 QSFVVLRIWPPQCQCLS 660
           Q+++ L IW P+C+ L+
Sbjct: 474 QTWITLHIWTPKCERLA 490


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +1

Query: 217 WSPSRCALCLVYVQEYIDVSHSAINSEQC 303
           W P     C+ Y+Q  +      I  E C
Sbjct: 70  WKPDASYKCMQYIQHPLPGQDYVIGQENC 98


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +1

Query: 217 WSPSRCALCLVYVQEYIDVSHSAINSEQC 303
           W P     C+ Y+Q  +      I  E C
Sbjct: 70  WKPDASYKCMQYIQHPLPGQDYVIGQENC 98


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +1

Query: 217 WSPSRCALCLVYVQEYIDVSHSAINSEQC 303
           W P     C+ Y+Q  +      I  E C
Sbjct: 70  WKPDASYKCMQYIQHPLPGQDYVIGQENC 98


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +1

Query: 217 WSPSRCALCLVYVQEYIDVSHSAINSEQC 303
           W P     C+ Y+Q  +      I  E C
Sbjct: 70  WKPDASYKCMQYIQHPLPGQDYVIGQENC 98


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +1

Query: 217 WSPSRCALCLVYVQEYIDVSHSAINSEQC 303
           W P     C+ Y+Q  +      I  E C
Sbjct: 70  WKPDASYKCMQYIQHPLPGQDYVIGQENC 98


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 710 QSFVVLRIWPPQCQCLSIMT*CVSCRLHDRQLVCG*LVLN 591
           Q+++ + IW P C  LS         ++D  L+   L LN
Sbjct: 228 QAWISVHIWSPNCDKLSSTEQLFIRPMYDAFLIDQSLALN 267


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 710 QSFVVLRIWPPQCQCLSIMT*CVSCRLHDRQLVCG*LVLN 591
           Q+++ + IW P C  LS         ++D  L+   L LN
Sbjct: 461 QAWISVHIWSPNCDKLSSTEQLFIRPMYDAFLIDQSLALN 500


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 710 QSFVVLRIWPPQCQCLSIMT*CVSCRLHDRQLVCG*LVLN 591
           Q+++ + IW P C  LS         ++D  L+   L LN
Sbjct: 461 QAWISVHIWSPNCDKLSSTEQLFIRPMYDAFLIDQSLALN 500


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 608 HRLAVDHAADKKHIKSLCSNIDTVE 682
           H L    + + + +K+ CS++D+V+
Sbjct: 260 HHLVNPQSLNHQEVKAECSDLDSVD 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,452
Number of Sequences: 336
Number of extensions: 3426
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)