Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20944
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    44   3e-05
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    29   0.71 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    28   1.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.6  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    28   1.6  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    28   1.6  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   2.2  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    27   2.2  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   2.9  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    27   3.8  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.0  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   6.6  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.6  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.8  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    25   8.8  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
 Frame = +2

Query: 509 LTKQTVALRE-VNDS-RLRIY-EQLELSIQDLERANHRLAVDHAAD-KKHIKSLCSNIDT 676
           LT+    LRE   DS +LR+  EQLEL  QDL++A      + ++D +  IKSL S++  
Sbjct: 518 LTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTN 577

Query: 677 VEAKCEELQKTVDELNVQLE 736
            +A+C   Q+ ++ELN Q++
Sbjct: 578 SQAECVSFQEKINELNSQID 597


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 569 QLELSIQDLE-RANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELN 724
           QLE   Q+LE R    +++    ++K +K+  ++I  ++   EEL KT+ +LN
Sbjct: 521 QLEKQPQELENRLLQEISILKQRNQKFLKNNATSIQQIQYLDEELGKTLKQLN 573


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 641 KHIKSLCSNIDTVEAKCEELQKTVDEL 721
           K ++ +CS+I   E+  +EL+KTVD L
Sbjct: 301 KRVEVVCSSISYKESDKKELEKTVDSL 327


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 357  QDDLTSRRCMLDDLQLAAELGKTLL-ERNKELETDLRQHQNVIEDQAQ-EIEYLQSKRLL 530
            QD++ S     +++   +E    LL E NK L  +L  H+N  +   + E +Y Q   L+
Sbjct: 992  QDEIASSSLRCENITKDSETRVALLLEENKHLNNELSSHRNAEKQHLEKENDYKQQLLLV 1051

Query: 531  CE 536
             E
Sbjct: 1052 TE 1053


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 23  LHETHVRPLALRSRDLWTRSSHTSNNHSILTLNGRCKIDRSNFLV 157
           L E HV P A+  R + T ++HT    +   +    KID  NFL+
Sbjct: 449 LDEVHVVPAAMFRRVVTTIAAHTKLGLTATLVREDDKIDDLNFLI 493


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 578 LSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNV 727
           L+    E+A  +LA +       +K   S  DTVEA  EE+QK   E++V
Sbjct: 53  LTTDPTEKAK-KLAEETGVQVHTLKIDISRSDTVEAGVEEIQKIFKEIHV 101


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 207 LYQLVSEPLRIMFSLCTRIH 266
           LYQLV+  +RI+F +C  +H
Sbjct: 268 LYQLVARNMRILFHVCHLVH 287


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 342 NEELEQDDLTSRRCMLDDLQLAAELGKTLLERNKELETDLRQHQNVI 482
           N EL  +D  +R      L+L  +L   ++E N +LET      NV+
Sbjct: 148 NPELTAEDAENRVQAQMPLELKCQLADIVIENNSDLETLYENIHNVL 194


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 363 DLTSRRCMLDDLQLAAELGKTLLERNKELETDLRQHQN 476
           +LT+ R  L +LQL AE G+T+ E      T + + +N
Sbjct: 220 ELTNLRICLHELQLNAEKGETIDESEDSKNTLVTEDEN 257


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = +3

Query: 297 TMSEVMDLVKKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLLERNKELETDLRQHQN 476
           T+  + +  + +  GNEE++  +   +   + D +L  ++ K   +  K LET  +    
Sbjct: 87  TLYNLKEFEELEAPGNEEVKAKEKRIKSPDVKDFKLPKDILKVKEKSEKPLETSQKVEIE 146

Query: 477 VIEDQAQEIEYLQSKRLLCER 539
            +E +  E E  Q   L  E+
Sbjct: 147 TVETKPGEPEVKQETNLQKEK 167


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 415 SGKPYSNATRNSRQTFASIKMLLKIKHKKSNTYKANGCFARGE 543
           SG+PY+ +T   R    S     + KH+  +  K + CF+  E
Sbjct: 730 SGQPYAPSTSRERNNNISELSNSRTKHRAKDDPKGSFCFSVDE 772


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 650 KSLCSNIDTVEAKCEELQKTVDELNVQLE 736
           KSL S +D +E  C++ +   +ELN Q +
Sbjct: 272 KSLNSYVDKLEVYCQKRKSLFEELNKQYQ 300


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 324 SPDPLLLTLFTVYGTMRYIDVF 259
           SP P L  LF+V G +  +DVF
Sbjct: 48  SPSPFLRWLFSVLGVLMSMDVF 69


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   LWSAHGQPARNACAATSPTKP 63
           L S H  P  N+ +ATS TKP
Sbjct: 160 LQSNHNVPTNNSSSATSSTKP 180


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 394 ICNWRPNSGKPYSNATRNS 450
           IC+W PNS   +S   +NS
Sbjct: 349 ICDWIPNSSNMFSMIVKNS 367


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 299 NVRSNGSGEEEIRWKRRAGARRSHLTSLYARR 394
           ++R +G   +    KR+  AR +H  SLYA++
Sbjct: 10  SIRKHGRRFDHEERKRKKAAREAHDASLYAQK 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,227
Number of Sequences: 5004
Number of extensions: 58423
Number of successful extensions: 211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)