Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20944
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0840 + 25293314-25293838 31 0.74
07_03_0439 + 18212584-18213065,18214164-18215010 31 0.98
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 31 0.98
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 30 2.3
09_04_0613 + 18953761-18953932,18954672-18954799,18954885-189549... 29 3.0
06_03_1308 - 29221583-29221630,29221709-29221786,29221908-292219... 29 3.0
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 4.0
04_03_0607 + 17954029-17954152,17954317-17954543 29 4.0
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 29 4.0
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 29 5.2
08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382,564... 28 6.9
06_03_1148 - 28011199-28011266,28011816-28011859,28013814-28013977 28 6.9
02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675... 28 6.9
01_05_0167 + 18849791-18849973,18850081-18850250,18850341-188504... 28 6.9
01_01_0473 - 3478660-3480338,3480507-3480609 28 6.9
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 28 9.2
05_01_0152 + 1008642-1008719,1008797-1009300 28 9.2
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 9.2
>06_03_0840 + 25293314-25293838
Length = 174
Score = 31.5 bits (68), Expect = 0.74
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +2
Query: 371 LTSLYARRF-ATGGRTRENPTRTQQGTRDRPSPASKCY*RSSTRNRILTKQTVALREVND 547
L ++ RF GG + + G D + + K R + R L + R
Sbjct: 28 LVGVHGDRFLGGGGGDGGDGGSSYDGGGDGGAASGKGTRRDERKERRLASNRESARRSRV 87
Query: 548 SRLRIYEQLELSIQDLERANHRLAVD-HAADKKHIKSLCSNIDTVE 682
R R ++L + +L ANHRLAV+ + A +H + N E
Sbjct: 88 RRRRQLDELSSHVAELRAANHRLAVELNRAAARHAQMARENARLAE 133
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 4 WSAHGQPARNACAATSPTKPRSLDT 78
W A AR A AA+SPT PR+ T
Sbjct: 34 WDAASHEARGAAAASSPTSPRAAST 58
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = +2
Query: 551 RLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDEL 721
RL + E++E ++ LER +++ + + K + ++E + +E +K +DE+
Sbjct: 823 RLALIERMERQVEGLEREKNKMLEEIERVGQSEKDAVCKVSSLEQRVDEREKEIDEM 879
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 356 ARRSHLTSLYARRFATGGRTRENPTRTQQGTRDRPS 463
AR HL + RR G +N T+Q TR PS
Sbjct: 97 ARNDHLNDHFERRTEAAGSHAQNVPFTEQNTRSNPS 132
>09_04_0613 +
18953761-18953932,18954672-18954799,18954885-18954956,
18955033-18955146,18955547-18955615,18955691-18955747,
18956262-18956315,18956387-18956449,18956543-18956605,
18956803-18956967,18957111-18957266,18957315-18957416
Length = 404
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 638 KKHIKSLCSNIDTVEAKCEELQKTVDELNVQLE 736
KK I++ S TVEA+ + K V ELN +LE
Sbjct: 129 KKDIEAQNSKKSTVEARAGDADKKVQELNAKLE 161
>06_03_1308 -
29221583-29221630,29221709-29221786,29221908-29221952,
29222075-29222187,29222283-29222406
Length = 135
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 308 SNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPTRTQQGTRDRPSPAS 472
S G G++++R KR A+ TS GG N + + QGT +P+ S
Sbjct: 41 SGGDGKQQVRIKRPKSAKALQCTSKCVATCIRGGEGPLNASGSFQGTIPQPAVLS 95
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 354 EQDDLTSRRCMLDDLQLAAELGKTLLERNKELETDLRQHQNVIEDQAQEIE 506
+++DL ++ C + G+T LE N ELE + R++ V D QE++
Sbjct: 228 QKEDLHAKACSAPPKEF---FGQTQLEWNWELEDEFRRYLPVYFDTMQEVD 275
>04_03_0607 + 17954029-17954152,17954317-17954543
Length = 116
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 439 TRNSRQTFASIKMLLKIKHKKSNTYKANG 525
T +SR FAS+ + KH +SNT A+G
Sbjct: 17 TNSSRHAFASVSLDDDFKHMESNTQDASG 45
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = +3
Query: 438 NKELETDLRQHQNVIEDQAQEIEYLQSKRLLCER*MTQG*GFMSNWNSVFKI*NELTTD* 617
N +L+ +L + I + E+ LQS L E + + + N+L
Sbjct: 213 NIKLQEELADQKKAISEVESEVRGLQSNLTLAEIKSKEA-KLQREVQEMEEKLNKLRNGV 271
Query: 618 LSIMQPTRNTLSH-YAQTLTLWRPNAKNYKRLWTNLTFN 731
+ + + + +++ + WR + +K LW N+T N
Sbjct: 272 ILVKPEDKKIIEESFSEKVNQWRKRKRMFKELWDNITEN 310
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 28.7 bits (61), Expect = 5.2
Identities = 32/148 (21%), Positives = 57/148 (38%)
Frame = +2
Query: 296 NNVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPTRTQQGTRDRPSPASK 475
NN+ S SG EE R +R H S +R N + ++ R +
Sbjct: 176 NNIDSGSSGSEESGKHRSHSEKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEKR 235
Query: 476 CY*RSSTRNRILTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKS 655
R R + A R+ + +L+ E ++++ DLE+ + D A KK +
Sbjct: 236 LRKEERRRRREERHRRKADRQASKLKLKHAETVDMA-SDLEK-DRESDSDADARKKGSYN 293
Query: 656 LCSNIDTVEAKCEELQKTVDELNVQLEI 739
D + + E +K ++ L + I
Sbjct: 294 GRDESDQQKLEIELREKALESLRAKKAI 321
>08_01_0655 +
5646567-5646650,5646675-5647697,5648227-5648382,
5648499-5648529,5648636-5648808
Length = 488
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 324 KKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLLERNKELET 455
KKKF G + L D++ L+L A+ G+ +L N+EL+T
Sbjct: 337 KKKFNGGKVLGGDNVLHSLSNARSLELLADAGEVIL--NRELKT 378
>06_03_1148 - 28011199-28011266,28011816-28011859,28013814-28013977
Length = 91
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 398 ATGGRTRENPTRTQQGTRDR--PSPASKCY*RSSTRN-RILTKQTVALREVNDSRLRIYE 568
A GGR E P + Q+G R R +C R + + E+ DSR +
Sbjct: 13 AAGGRGEEAPKQAQRGKRGRSDEDTLDRCIDGHMGRAFPCRPRVQILCEELRDSRASACK 72
Query: 569 QLELSIQDLERANHRLAVD 625
+L LSI ++ +AVD
Sbjct: 73 KLHLSIVCIKFHKKSIAVD 91
>02_03_0187 -
16166365-16166571,16166665-16166962,16167197-16167524,
16167990-16168157,16168803-16168858,16168991-16169076,
16169846-16169977
Length = 424
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 154 SYSRSFTVITRFVKFRRRYISWSPSRCALCLVYVQEYI 267
SY R T F F +YI P LC YV Y+
Sbjct: 305 SYGRCMIDATEFRVFEHKYILRQPEATYLCGFYVMRYM 342
>01_05_0167 +
18849791-18849973,18850081-18850250,18850341-18850413,
18850729-18850839,18850947-18850992,18851085-18851148,
18851810-18851912,18851999-18852094,18852186-18852215,
18852434-18852533,18852761-18852845,18852965-18853088
Length = 394
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 342 NEELEQDDLTSRRCMLDDLQLAAELGKTLLERNKE----LETDLRQHQNVIEDQAQEIEY 509
N+E+EQ L L EL + LLERN+ +TD N +D+ E++
Sbjct: 153 NQEIEQAYLDLLNSSKQTLGSMMELQEALLERNRATKDVTDTDNSSELNGEDDEWSEVQK 212
Query: 510 LQSK 521
LQ +
Sbjct: 213 LQKR 216
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 345 EELEQDDLTSRRCMLDDLQ-LAAELGKTLLERNKELETDLRQHQNVIEDQAQEIEYLQSK 521
E+LE + + RC + L+ + + KELE L H + IE +E+E++ K
Sbjct: 205 EKLEALEEKNTRCQCEKLEEKLKDSHSEISSLQKELEGQLAHHDHEIEKCKKELEHVHEK 264
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 434 TQQGTRDRPSPASKCY*RSSTRNRILTKQTVALREVNDSRLRIYEQLELSIQDLERANHR 613
+ G R SPA K R + L + V+ ++ + + +LE ++DLER+N
Sbjct: 640 SSSGRRRGRSPADK----EHRRLKRLLRNRVSAQQARERKKAYMSELEARVKDLERSNSE 695
Query: 614 L 616
L
Sbjct: 696 L 696
>05_01_0152 + 1008642-1008719,1008797-1009300
Length = 193
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 311 NGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPTRTQQGTRDRPSPA 469
+GSG+ RW+ R RR + + ATG RTR T R+R + A
Sbjct: 132 SGSGDCR-RWRMRRRGRRGEVGMAAGKDAATGVRTRCRRPETGVDDRERAAVA 183
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 348 ELEQDDLTSRRCMLDDLQLAAELGKTLLERNKELETDL 461
++EQ+D+T + ++DD LA EL + E + E+ ++
Sbjct: 488 DVEQEDITDKGDVIDDGFLAEELNVEMPEEDAEMSQEV 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,445
Number of Sequences: 37544
Number of extensions: 385982
Number of successful extensions: 1144
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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