Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20944
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 605 NHRLAVDHAADKKHIKSLCSNID 673
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 605 NHRLAVDHAADKKHIKSLCSNID 673
           NH   +   A K ++KSL SN D
Sbjct: 249 NHEKMLREQAKKMNVKSLVSNQD 271


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 642 NTLSHYAQTLTLWRPNAKNYKRL 710
           +T + ++QT   W P  +NYK L
Sbjct: 431 STSAGFSQTNKTWLPVNENYKSL 453


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 25  ARNACAATSPTKPRSLDTQLAYIEQPFDTDIER 123
           ARN  A  S T+   +     +I +P D  +ER
Sbjct: 687 ARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVER 719


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,915
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)