Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20944
(754 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02930.1 68416.m00288 expressed protein ; expression support... 30 1.4
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 30 1.9
At3g51400.1 68416.m05630 expressed protein contains Pfam profile... 30 1.9
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 30 1.9
At3g19370.1 68416.m02457 expressed protein 29 2.5
At2g34580.1 68415.m04248 hypothetical protein 29 2.5
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 29 3.3
At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain... 29 3.3
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 29 3.3
At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico... 29 4.4
At4g13200.1 68417.m02053 expressed protein hypothetical protein ... 29 4.4
At1g26310.1 68414.m03209 MADS-box protein, putative strong simil... 29 4.4
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 28 5.8
At1g22275.1 68414.m02784 expressed protein 28 5.8
At1g22260.1 68414.m02782 expressed protein 28 5.8
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t... 28 7.7
At5g28400.1 68418.m03448 expressed protein 28 7.7
At5g28320.1 68418.m03438 expressed protein This is likely a pseu... 28 7.7
At4g15780.1 68417.m02402 synaptobrevin-related family protein si... 28 7.7
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 28 7.7
At3g28320.1 68416.m03538 hypothetical protein similar to At14a (... 28 7.7
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 7.7
At3g13130.1 68416.m01643 hypothetical protein 28 7.7
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/89 (21%), Positives = 44/89 (49%)
Frame = +2
Query: 470 SKCY*RSSTRNRILTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHI 649
SK R+ +++ + ++ +R+ L+ + + + + +A+ A+ +
Sbjct: 207 SKALCRADDASKMAAIHAEKVEILSSELIRLKALLDSTREKEIISKNEIALKLGAEIVDL 266
Query: 650 KSLCSNIDTVEAKCEELQKTVDELNVQLE 736
K N ++EAK +EL+ +++LNV LE
Sbjct: 267 KRDLENARSLEAKVKELEMIIEQLNVDLE 295
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +3
Query: 297 TMSEVMDLVKKKFGGNEELEQDDLTS--RRCMLDDL------QLAAELGKTLLERNKELE 452
++ E+++ F E ++ DL R+C+ DD+ QL +LGKTL ++ KE
Sbjct: 575 SLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVLAAGIRQLLKQLGKTLKKKEKETV 634
Query: 453 TDLRQHQNVI 482
++ + V+
Sbjct: 635 KEILSNAQVV 644
>At3g51400.1 68416.m05630 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 277
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = +2
Query: 506 ILTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEA 685
++TK + ++R + E + D E +A + D+ IKS+ +N+D V+
Sbjct: 189 LVTKLVIKNVTSTSGQVRTGHRNEFQMMDEELRRFSMAEEIKKDR--IKSMITNLDKVDV 246
Query: 686 KCEELQKTVDEL 721
E+L+++++ L
Sbjct: 247 AVEDLEESLERL 258
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 506 ILTKQTVALREVNDSRLRIYEQLELSIQDLE----------RANHRLAVDHAADKKHIKS 655
+LT + LR+ +++ + L+ ++QD++ + LA ++ K+ + S
Sbjct: 953 VLTDIKLQLRDTQETKSKEISDLQSALQDMQLEIEELSKGLEMTNDLAAENEQLKESVSS 1012
Query: 656 LCSNIDTVEAKCEELQKTVDE 718
L + ID E K EE+ K +E
Sbjct: 1013 LQNKIDESERKYEEISKISEE 1033
>At3g19370.1 68416.m02457 expressed protein
Length = 704
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 503 RILTKQTVALREVNDSRLRIYEQLELSI-QDLERANHRLAVDHAADKKHIKSLCSNIDTV 679
R L + LRE N ++ + E S+ +DL+ + + +K + SL D
Sbjct: 498 RNLEAEMKTLRE-NKEKVEAEMETEKSMKEDLDTKLNITRANLNETQKKLSSLEVEFDYR 556
Query: 680 EAKCEELQKTVDELNVQLE 736
++ CEEL+ T EL +QLE
Sbjct: 557 KSCCEELEGTCIELQLQLE 575
>At2g34580.1 68415.m04248 hypothetical protein
Length = 203
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +2
Query: 494 TRNRILTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNID 673
TRN+ L A +E+ ++ +I +IQ +ER L AA I L SNID
Sbjct: 17 TRNQRLNLLQ-AEKELQVNKAQILASKHATIQSIERRCLMLEQKIAAQNLKITILRSNID 75
Query: 674 TVEAKCEELQKTVDELNVQLE 736
+++K + + L +++E
Sbjct: 76 DLDSKYHSYIQQLRTLKIEVE 96
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 485 RSSTRNRILTKQTVALREVNDSRLRIYEQLELSIQDLER-ANHRLAVDHAAD-KKHIKSL 658
++ T + L ++ + L EVN+ Y+Q +I LER +H A D+A + +
Sbjct: 290 QAETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLEREVSH--AQDNAKRLSSEVLAG 347
Query: 659 CSNIDTVEAKCEELQKTVDELNVQLE 736
+ I TVE +C L+ + V+ E
Sbjct: 348 AAKIKTVEEQCALLESFNQTMKVEAE 373
>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 343
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 300 MSEVMDLVKKKFGGNEELEQDDLTSRRCMLDDLQLAAELGKTLLERNKELETDLRQHQNV 479
M+ ++ L+K +EL +DDL+ L L A L LE E ++ ++++
Sbjct: 239 MNVLLSLIKTMCQSTQELSKDDLSDADAALAYL-TDAGLNLNWLEEKLEEVSEKKENEEA 297
Query: 480 IEDQAQEI-EYLQSKRLLC 533
E + EI E L+ +L C
Sbjct: 298 GETRVHEIEEELKELKLKC 316
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +2
Query: 557 RIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDT-VEAKCEELQ-----KTVDE 718
+I +L + I ++E A H A+ K + SL + DT +E +ELQ K VD+
Sbjct: 316 KIISELNMEIHNVETALANERESHVAEIKKLNSLLNKKDTIIEEMKKELQERPSAKLVDD 375
Query: 719 LNVQLEI 739
L +++I
Sbjct: 376 LRKKVKI 382
>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 547
Score = 28.7 bits (61), Expect = 4.4
Identities = 33/152 (21%), Positives = 56/152 (36%)
Frame = +2
Query: 299 NVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATGGRTRENPTRTQQGTRDRPSPASKC 478
N N SGE+ KRRA T+ + R + E + + + PSP S
Sbjct: 288 NNNMNSSGEKRESVKRRAAGGDIAPTTRHYRSVSVDSCFMEKLSFGDESLKPPPSPGSMS 347
Query: 479 Y*RSSTRNRILTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSL 658
S T + E N+ E ++ AN +LA +D K +K +
Sbjct: 348 RKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKI------MANDKLAEMAMSDPKRVKRI 401
Query: 659 CSNIDTVEAKCEELQKTVDELNVQLEIYRRRA 754
+N + E + + EL +++ + A
Sbjct: 402 LANRQSAARSKERKMRYIVELEHKVQTLQTEA 433
>At4g13200.1 68417.m02053 expressed protein hypothetical protein
sll1769 - Synechocystis sp,PID:d1018406
Length = 185
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 412 NSGKPYSNATRNSRQTFASIKMLLKIKHKKSNTYKANGCFARG 540
N P+S RNSR F ++ L ++ ++ +T + C +G
Sbjct: 19 NQTSPHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCSTKG 61
>At1g26310.1 68414.m03209 MADS-box protein, putative strong
similarity to DNA-binding protein [Brassica rapa subsp.
pekinensis] GI:6469345, SP|Q41276 Floral homeotic
protein APETALA1 (MADS C) {Sinapis alba}; contains
InterPro accession IPR002100: Transcription factor,
MADS-box
Length = 255
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +2
Query: 551 RLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDEL 721
R R + + S+ L+R + +++ K IK + + T + +CE+L ++VD++
Sbjct: 142 RSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDDV 198
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 398 ATGGRTRENPTRTQQGTRDRPS--PASKCY*RSSTRNRILTKQTVALREVNDSRLRIYEQ 571
A G + ENP Q T+D + PA LTK L EV+ + Y+Q
Sbjct: 169 AEGDKNNENPQEPNQSTQDSSTNPPADISQSERQEMQSKLTKLLSMLDEVDRRYKQYYQQ 228
Query: 572 LELSIQDLE 598
+++ + +
Sbjct: 229 MQIVVSSFD 237
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 572 LELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNVQLE 736
LE +Q N +L V D+K + L S + + C++L +T+ L Q++
Sbjct: 79 LEEKLQSAFNENAKLRVRQKEDEKLWRGLESKFSSTKTLCDQLTETLQHLASQVQ 133
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 572 LELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNVQLE 736
LE +Q+ N +L V D+K + L S + + C++L +T+ L Q++
Sbjct: 79 LEEKLQNAFNENAKLRVRKKEDEKLWRGLESKFSSTKTLCDQLTETLQHLASQVQ 133
>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 917
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 596 ERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNVQLE 736
++AN +A+ + KS + ++ + K EEL++ + ELN+ L+
Sbjct: 763 QQANKEVAIICNHQRTVSKSHGAQVEKLAVKIEELREQIKELNIDLD 809
>At5g28400.1 68418.m03448 expressed protein
Length = 996
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 348 ELEQDDLTSRRCMLDDLQLAAELGKTLLE 434
E+++D++ SRR LDDL+L + + +LE
Sbjct: 921 EVDEDEVLSRRSGLDDLELVSSRLQKVLE 949
>At5g28320.1 68418.m03438 expressed protein This is likely a
pseudogene.
Length = 967
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 348 ELEQDDLTSRRCMLDDLQLAAELGKTLLE 434
E+++D++ SRR LDDL+L + + +LE
Sbjct: 892 EVDEDEVLSRRSGLDDLELVSSRLQKVLE 920
>At4g15780.1 68417.m02402 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}
Length = 194
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 438 NKELETDLRQHQNVIEDQAQEIEYL 512
NKE +++H N I D A+EIE L
Sbjct: 108 NKEFGPVMKEHMNYIVDHAEEIEKL 132
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +2
Query: 464 PASKCY*RSSTRNRILTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKK 643
P S C R STR+ + ++ + ++ L + +E + E H L + +K
Sbjct: 514 PESSC--RPSTRDILQSEVVNGIPDLYAEGLSL--SIEQEDTESELLQHFLFLSQEKRQK 569
Query: 644 HIKSLCSNIDTVEAKCEELQK 706
H +L I +VEA EE+ K
Sbjct: 570 HAGNLMEEIASVEADIEEIVK 590
>At3g28320.1 68416.m03538 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 280
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/71 (21%), Positives = 36/71 (50%)
Frame = +2
Query: 506 ILTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEA 685
++ Q V + V ++ L ++ ++ ++ R+ ADK+ +KS+ +D ++
Sbjct: 152 VIVVQWVGVNYVLNNSLEALQKQLKALNKVKPIPERITEGMEADKEGMKSVPEQVDELKD 211
Query: 686 KCEELQKTVDE 718
+ L +TVD+
Sbjct: 212 QISSLLQTVDD 222
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 587 QDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNVQLE 736
++++R +D A KKHI++L N + + +L + + ELN+ E
Sbjct: 2308 EEMKRILDEKHMDLAQAKKHIEALERNTADQKTEITQLSEHISELNLHAE 2357
>At3g13130.1 68416.m01643 hypothetical protein
Length = 201
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 620 VDHAADKKHIKSLCSNIDTVEAKCEEL 700
V HA DK ++ LC+ + V AKC L
Sbjct: 41 VTHAVDKNYMFLLCNGLVVVVAKCSGL 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,931
Number of Sequences: 28952
Number of extensions: 306739
Number of successful extensions: 1004
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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